ERISdb: a Database of Plant Splice Sites



Select a species and type of splice site




OR, alternatively, select a gene name


 atgc   highly conserved terminal intronic nucleotides at 5' or 3' end.

 atgc   branch site.


#1
gene: PP1S123_22V6, transcript: PP1S123_22V6.1
Orthologs: AT2G30460 AT1G06890 GLYMA06G14970 GLYMA04G39920 LOC_Os01g07310 LOC_Os05g07670 SELMODRAFT_268896 SELMODRAFT_268189 Vv13s0067g02970 GRMZM2G063253 GRMZM2G063511 GRMZM2G116053 GRMZM2G081848
CTACTTGTGTAGCACAAATTgtatcctttccatgcacggattttgatacgtctttggcaaaggtcaagta ... ataacttgcagtttgttctaaaattttgctcctgaacttcgggatggtagATGACCAACACCATTCAGAA

#2
gene: PP1S123_22V6, transcript: PP1S123_22V6.2
Orthologs: AT2G30460 AT1G06890 GLYMA06G14970 GLYMA04G39920 LOC_Os01g07310 LOC_Os05g07670 SELMODRAFT_268896 SELMODRAFT_268189 Vv13s0067g02970 GRMZM2G063253 GRMZM2G063511 GRMZM2G116053 GRMZM2G081848
CTACTTGTGTAGCACAAATTgtatcctttccatgcacggattttgatacgtctttggcaaaggtcaagta ... ataacttgcagtttgttctaaaattttgctcctgaacttcgggatggtagATGACCAACACCATTCAGAA

#3
gene: PP1S123_22V6, transcript: PP1S123_22V6.3
Orthologs: AT2G30460 AT1G06890 GLYMA06G14970 GLYMA04G39920 LOC_Os01g07310 LOC_Os05g07670 SELMODRAFT_268896 SELMODRAFT_268189 Vv13s0067g02970 GRMZM2G063253 GRMZM2G063511 GRMZM2G116053 GRMZM2G081848
CTACTTGTGTAGCACAAATTgtatcctttccatgcacggattttgatacgtctttggcaaaggtcaagta ... ataacttgcagtttgttctaaaattttgctcctgaacttcgggatggtagATGACCAACACCATTCAGAA