ERISdb: a Database of Plant Splice Sites



Select a species and type of splice site




OR, alternatively, select a gene name


 atgc   highly conserved terminal intronic nucleotides at 5' or 3' end.

 atgc   branch site.


Warning:  preg_match(): Allocation of JIT memory failed, PCRE JIT will be disabled. This is likely caused by security restrictions. Either grant PHP permission to allocate executable memory, or set pcre.jit=0 in /var/www/share/ERISdb/u12.php on line 206



#1
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.1
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
TTCCTTAGTTTCATCTGGAAgtatcctttttcactattactagatgctatctgaggcaaatgtatataat ... gcatcatatttttttgtgattttgtaaaatgctaccttaactttgggcagTAGATAACAGTGAGGTAGGT



#2
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.1
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
AGTGGATGCATTAGAATCCCgtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAA



#3
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.2
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
TTCCTTAGTTTCATCTGGAAgtatcctttttcactattactagatgctatctgaggcaaatgtatataat ... tcatatttttttgtgattttgtaaaatgctaccttaactttgggcagtagATAACAGTGAGGTAGGTTCT



#4
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.2
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
AGTGGATGCATTAGAATCCCgtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAA



#5
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.3
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
AGTGGATGCATTAGAATCCCgtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAA



#6
gene: LOC_Os03g49730, transcript: LOC_Os03g49730.4
Orthologs: AT2G17900  GLYMA06G11490  GLYMA04G43200  PP1S234_67V6  SELMODRAFT_231366  SELMODRAFT_114558  Vv18s0001g03730  GRMZM2G457881  GRMZM2G399311  
AGTGGATGCATTAGAATCCCgtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAA