ERISdb: a Database of Plant Splice Sites



Select a species and type of splice site




OR, alternatively, select a gene name


 atgc   highly conserved terminal intronic nucleotides at 5' or 3' end.

 atgc   branch site.


#1
gene: GRMZM2G312738, transcript: GRMZM2G312738_T01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TACTTCCCTTATTTGCCACTgtatcctcttcaggaggctgcttatgcatttctatatcacatcttctttctgttattttcttaacatattcaccagATATCACAGATGTTTGTTTG

#2
gene: GRMZM2G312738, transcript: GRMZM2G312738_T01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TACTGAGATTGGTGTGATCTgtatccaaaaatgttcaatcgaccctagattcagttacatgctttttttt ... gggagtggtactgctaatctgttaagtcactaaccttaacgatatcttagATAGGTCTGGATTAGAAACG

#3
gene: GRMZM2G312738, transcript: GRMZM2G312738_T01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TGATTGCAAAGCAAGCTATTgtatccttcagtttttttattttatcttgtactacctttggtctctttta ... ttgttcctcacaggcatgctactgcattaagtttccttgacacttcccagTTATTGTATTATCTATTTGA

#4
gene: GRMZM2G312738, transcript: GRMZM2G312738_T02
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TACTTCCCTTATTTGCCACTgtatcctcttcaggaggctgcttatgcatttctatatcacatcttctttctgttattttcttaacatattcaccagATATCACAGATGTTTGTTTG

#5
gene: GRMZM2G312738, transcript: GRMZM2G312738_T02
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TACTGAGATTGGTGTGATCTgtatccaaaaatgttcaatcgaccctagattcagttacatgctttttttt ... gggagtggtactgctaatctgttaagtcactaaccttaacgatatcttagATAGGTCTGGATTAGAAACG

#6
gene: GRMZM2G312738, transcript: GRMZM2G312738_T02
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S51_66V6 PP1S274_80V6 SELMODRAFT_81560 SELMODRAFT_88092 Vv00s0299g00030
TGATTGCAAAGCAAGCTATTgtatccttcagtttttttattttatcttgtactacctttggtctctttta ... ttgttcctcacaggcatgctactgcattaagtttccttgacacttcccagTTATTGTATTATCTATTTGA