ERISdb: a Database of Plant Splice Sites



Select a species and type of splice site




OR, alternatively, select a gene name


 atgc   highly conserved terminal intronic nucleotides at 5' or 3' end.

 atgc   branch site.


#1
gene: GRMZM2G114001, transcript: GRMZM2G114001_T01
Orthologs: AT4G13345 AT3G24460 GLYMA09G32070 GLYMA08G04410 GLYMA07G09740 GLYMA05G35320 PP1S126_191V6 SELMODRAFT_85365 SELMODRAFT_83891 SELMODRAFT_117651 SELMODRAFT_89240 SELMODRAFT_179397 SELMODRAFT_104684 SELMODRAFT_449363 Vv11s0016g04200
TGGCGAGCCATGCATTCTTTgtatcctacagtttaaacaacattattttttatctaactattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTT

#2
gene: GRMZM2G114001, transcript: GRMZM2G114001_T02
Orthologs: AT4G13345 AT3G24460 GLYMA09G32070 GLYMA08G04410 GLYMA07G09740 GLYMA05G35320 PP1S126_191V6 SELMODRAFT_85365 SELMODRAFT_83891 SELMODRAFT_117651 SELMODRAFT_89240 SELMODRAFT_179397 SELMODRAFT_104684 SELMODRAFT_449363 Vv11s0016g04200
TGGCGAGCCATGCCTTCTTTgtatcctacagtttaaacaacattgttttttatctaacaattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTT

#3
gene: GRMZM2G114001, transcript: GRMZM2G114001_T02
Orthologs: AT4G13345 AT3G24460 GLYMA09G32070 GLYMA08G04410 GLYMA07G09740 GLYMA05G35320 PP1S126_191V6 SELMODRAFT_85365 SELMODRAFT_83891 SELMODRAFT_117651 SELMODRAFT_89240 SELMODRAFT_179397 SELMODRAFT_104684 SELMODRAFT_449363 Vv11s0016g04200
TGGCGAGCCATGCATTCTTTgtatcctacagtttaaacaacattattttttatctaactattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTT