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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCATGTCCTAATTGTGGTACTGAAAACCTTTCCTTCTTTGGGACTATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccctttatcatagatcgtgttatctagattcgtgtctacattcttcatgtgcttatttctaagaagcacacgattgcaatgttctatttccag

Basic information

species Zea mays
transcript GRMZM5G896082_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G896082_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g64020.1 (Oryza sativa), 5'ss of exon 6
GGGCCATGTCCTAATTGTGGTACTGAAAACCTTTCCTTCTTTGGGACTATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccctttatcatagatcgtgttatctagattcgtgtctacattcttcatgtgcttatttctaagaagcacacga-ttgcaa-tgttctatttccag---------------------------------------
||||||||||| ||||||||  ||||||||||||||||||| |||||||| |||||||| || |||||||||  |||||||||||||||||||||| ||||||     |  ||    ||  | |||| |  |    |  |  |||| || || ||  |||     || |     ||| || ||| | |  || | | |                                        
GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtattatattctcctatacttttatatgtacatattccatcattgttgat-tgtgtataatatagtactgttcgagttacaaatataatactacaatttgtgtcaatctgaaaatgtgcaactctttgttttgcag

upper sequence: GRMZM5G896082_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G42360.2 (Glycine max), 5'ss of exon 9
GGGCCATGTCCTAATTGTGGTACTGAAAACCTTTCCTTCTTTGGGACTATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccctttatcatagatcgtg--ttatctagattcg---tgtctacattcttcatgtgcttatttctaagaagcacacgatt-----gcaatgttctatttccag-------------------------------
|| || ||||| || ||||||||||||||    || |||||||||||||||||||| || || ||||||| | | || |||||||| ||||||| |||||| |        |  |    | ||  |||||   |  |    | || | ||| ||||| | | |||   ||| |   | | ||||        ||| |  ||    ||                               
GGCCCTTGTCCCAACTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTGTCGGTTTCAAGTGGCGATTCCACCAACAAAGTCAAATGTGAAAAgtaagtataaaactagttagccctgcattatccgcaccctgtctctccatattattcattttcatatcattaa-actaatatgatttattaattatgattgatcattagtttaaccatccaaagttatattttgcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50332707|gb|CO527833.1|CO527833
EST:     CCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
genomic: CCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
EST: gi|149111106|gb|EE294602.2|EE294602
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
EST: gi|78092903|gb|DV521277.1|DV521277
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
EST: gi|93014353|gb|EB639873.1|EB639873
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCANAATCTCGGGTGATCACACTTCC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
EST: gi|71763483|gb|DR961420.1|DR961420
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
EST: gi|13516143|gb|BG518419.1|BG518419
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTC
EST: gi|149058762|gb|EE156780.2|EE156780
EST:     ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAA                         TTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC
genomic: ATACTGTCAGTCTCCAGTGGCGGTACAACAAACAAAGTGAAATGTGCAAAgtatgcccct ... ctatttccagTTGCAGTACCGAGCTGGAATATGACTCAAAATCTCGGGTGATCACACTTCC