Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTAGCGTCGAGGTAACTGGTTCACCAACAGAAAAGGCTATCCTATCTTGGGGTCTTGATgtaagttcattagctactaaaacttctatttctgttgatattgttaaaataatttcatttctgataactacattttttccttgtcctgctggtacctcatag

Basic information

species Zea mays
transcript GRMZM5G892495_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G892495_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 5'ss of exon 2
GATGGTAGC---GTCGAGGTAACTGGTTCACCAACAGAAAAGGCTATCCTATCTTGGGGTCTTGATgtaagttcattagctactaaaacttctatttctgttgatattgttaaaataatttcatttctgataactacattttttccttgtcctgctggtacctcatag--
||||||||     | ||| |||| || |||||||| ||||||||||| || ||||||||| |||| |||||||   | ||     |  ||  || ||                      |||  || || |  |||||||||| | || ||  |||| | |||| |    
GATGGTAGTCCTATTGAGATAACAGGCTCACCAACTGAAAAGGCTATTCTTTCTTGGGGTGTTGAGgtaagtttccttgc-----attctcatacttt-------------------gcttctcttttggtggctacatttttac-ttatctggctgatgcctcctgtag