1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACGGATTCAAGACTCAGACCAGATCAGCGACATGTAGAGAACGGGGAGTATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccatgcatctcgaatatttggcgacaaatagaatagaaaagcttatgtaattggattttcttcactgcag
species | Zea mays |
transcript | GRMZM5G875564_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG TCACGGAAGATGCAGGACAATGGTTGGAAEST: gi|211125948|gb|FL448868.1|FL448868
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAA
EST: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG TCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGATEST: gi|211125947|gb|FL448867.1|FL448867
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
EST: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG TCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGATTCAAGACTCAGACCAGATCAGCGACATGTAGAGAACGGGGAGTATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccatgcatctcgaatatttggcgacaaatagaatagaaaagcttatgtaattggattttcttcactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG