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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGTTTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAGgttattttcatcaccttttgttctcatggtttatcgtatttttccctttttatagatcaatctacatgagtgtatattatctgtaatgttttgatcaaca...

Basic information

species Zea mays
transcript GRMZM5G871861_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G871861_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g10340.1 (Oryza sativa), 5'ss of exon 9
TCATCTCCCCACTTACATATTGTTTGACAAGGTGACTGAAGTTTCTCGGTTTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAGgttattttcatcaccttttgttctcatggtttatcgtatttttccctttttatagatcaatctacatgagtgtatattatctgtaatgttttgatcaaca-----
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TCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGgttgtttttttcccactgtgctttcttatttt----tgttatgagttatgaacaaaataagttgcatca-tgtttgcatcttatttcgggtagactagtatgatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149004383|gb|EE039059.2|EE039059
EST:     TTCCAGAAATCACAAGTGAATCAAAGGTATTTGTGCCAAAAGTTACTAAG                         AAACTTCTTTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTA
genomic: TTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAGgttattttca ... tgtcttgcagAAACTTCTTTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTA
EST: gi|78113561|gb|DV531952.1|DV531952
EST:     TTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAG                         AAACTTCTTTGCCAGCATTTTGATCTCCACAGACGATTGATTGG
genomic: TTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAGgttattttca ... tgtcttgcagAAACTTCTTTGCCAGCATTTTGATCTCGACAGACGATTGATTGG
EST: gi|149001459|gb|EE038760.2|EE038760
EST:     TTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAG                         AAACTTCTTTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTA
genomic: TTCCAGAAATCACAAGTGAATCAAAAGTATTTGTGCCAAAAGTTACTAAGgttattttca ... tgtcttgcagAAACTTCTTTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTA