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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag

Basic information

species Zea mays
transcript GRMZM5G864319_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g01390.1 (Oryza sativa), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||| |  || ||    |   |  |     || |  |  || || |||  ||  | || |     ||   ||| |  |  |   || |    |   | ||    ||          | |||    | | |||  |||||| ||||  || ||| |||     ||||||| |    ||||||
TGGACATGGTTACCTGAACAGCAGCGGGCTTCCTGAATTGTTTGCTATCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTTGTTTTGCTATTGCAGgttagtatgctattgttgtt-ttgttctgtgg--atactaataact-ctcctacctgcttgtg-gttgtgtg---gatggcctagcttgttgggccgaatcataggtccag----------tccttcaagtttcctcagttttggtcaatt-tacagtcataa----cctttggtgctctctgcag

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G04940.1 (Glycine max), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttga-gtatgtgcgacatgacagattgtgt-tccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || |||||||||||   ||||||||| || ||||| || ||||| |||||  ||||| | ||||| |||||||||||||| | ||| |||||||| |||||||   | |   || |     ||||   | | | |    |||  |  |  | |||||   |  |  || |||| |  |   || | || ||| |||   | |                                                                                     
TGGCCATGGTTACCTTTGCAGCAGTGGTCTCCCTGAGTTATTTGCAGTCTACATTCCTACCTGCACATATGAAGGAGACAACACTGTGCTGCTTTTACAGgttt---tttaaatgttaaatatagctt-ttaccatcacattgtgtgttgtttgttgatacaattttgatatgaaatttctcgtcttcaaattggtttgtgcat------------------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaa-agaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
||| |||||||||||    |||||||| || ||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||| || ||||| |||||||||       | |      ||  |||| ||  |  |  |   || |  || || ||| | | | |  |           |||||||   ||||| || |    |  |                                                                             
CGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagttaaaaatgttatacaatcattttgttaatcattatt--taattcagtctttactaagt---------ccttccacagatgttaacaggatttaatgtg----------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA14G14990.1 (Glycine max), 5'ss of exon 8
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaa-agaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || |||||||||||    |||||||| || ||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||| || ||||| |||||||||       | |      ||  |||| ||      ||||   || | || || | || ||    | | ||  | |   ||||||    ||||| || |    |  |                                                                             
TGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagataaaaatcttatacaatcat------tttgttaaccattatttaattaagt----ctttactaagt-ccttccacggctgttaacaggatttaatgtg----------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaa-agaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || |||||||||||    |||||||| || ||||| || |||||||| ||||||||||| ||||| ||||||||||||||| |||| || || || |||||||||       | |      ||  |||| ||  |  |  |   || |  || || ||| | | | |  |           |||||||   ||||| || |    |  |                                                                             
TGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAGgtttgttaaaagataaaaatcttatacaatcattttgttaatcattatt--taattaagtctttactaagt---------ccttccacagctgttaacaggatttaatgtg----------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G15320.1 (Glycine max), 5'ss of exon 10
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || |||||||||||   ||||||||| || ||||| || ||||| |||||  ||||| | ||||| || ||||||||||| | ||| |||||||| |||||||   | |   || |     ||||   ||    ||  ||  | || |  | | | | | | |   |    |    |  |  | || ||| |||   | |  |                                                                                  
TGGCCATGGTTACCTTTGCAGCAGTGGTCTGCCTGAGTTATTTGCAGTCTACATTCCTTCCTGCACATACGAAGGAGACAACACTGTGCTGCTTTTACAGgttt---tttaaatgttatatatagcttgtaccattatattgtgttatttgttgataaatttttttaatgaaatttctcat-ctgcaaattggtttgtgcatca----------------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgttt--ctgatggcactagccaataatcgtagtt--ttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 |||||||| ||| ||    |||||||||| || ||  |||||||||| ||||||||||| ||||| || |||||||||||| |||| ||||  || ||||| | | |  |   |||   ||  |   || | |    | |   |  |  |   | | | || |   |   |  || |   || | ||     |   |                                                                                            
TGGACATGGATACTTGTGGTGCAGTGGGCTCCCCGAGCTGTTTGCTGTATATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtcatcaactgcgagctattctcacttactagaataaatctgtcagctcaaatagatttcttagcatgtggctcgttatcttatgtctctctgg------------------------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgt----ttgtatgtttctgatggcac-tagccaataatcgtagttttg-gctactactagttg--agtatgtgcgacatgac----agattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 |||||||| ||| ||    | |||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||| ||||  |||  || |||||    ||  |  | |||  | | |  |  |   |||   |  |||   ||  |||||  ||   |        || |||      | ||| ||||  | ||   |||||  ||  ||  |  |                                                                          
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag-------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 7
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagcc-aataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || |||||||||||    || ||||||||||| || || ||||| || ||||| ||||| || || |||||||||||||||||||| |||||||| ||||| |||    || | ||   | ||    |||  |  |  |||  |  | | | |    | |   |  |   | |||  ||| | |  | | | |||||                                                                                         
TGGCCATGGTTACCTATGTAGTAGTGGGCTTCCCGAGTTATTTGCCGTGTATGTCCCTGCCTGTACATATGAAGGAGACAATATTGTGCTGCTTTTACAGgtctgtgaaattgtaatatgattattttaatcttgatgctttctgtcatttccatgcaaat---tatgttgtaacattttgagatatagact-gttaattgcct-----------------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ35164 (Selaginella moellendorffii), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcacta-gccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || ||||| |||||   |  |||||| ||||| ||||||| |||||  ||||||||||| ||||| || || ||||||||| | ||||| ||| | |||||   | |   |    || |   | |      |||  |||||||   ||                                                                                                                                          
TGGGCATGGATACCTCTGCTCCAGTGGTCTTCCAGAATTGTATGCTGCATATGTTCCTGCATGCACCTACGAGGGAGACAATGTCGTTCTTCTTCTTCAGgtaaatcttcatacagtgtcttcatgttgcgtatctaagttttgag-acag----------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ24114 (Selaginella moellendorffii), 5'ss of exon 9
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcacta-gccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag
 || ||||| |||||   |  |||||| ||||| ||||||| |||||  ||||||||||| ||||| || || ||||||||| | ||||| ||| | |||||   | |  ||    || |   | |      |||  |||||||   ||                                                                                                                                          
TGGGCATGGATACCTCTGCTCCAGTGGTCTTCCAGAATTGTATGCTGCATATGTTCCTGCGTGCACCTACGAGGGAGACAATGTCGTTCTTCTTCTTCAGgtaaatcttcttacagtgtcttcatgttgcgtatctaagttttgag-acag----------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33104324|gb|CF064284.1|CF064284
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCGTATCTCAATTGACATCTGGAAAGCAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|211453990|gb|FL038183.1|FL038183
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCGTATCTCAATTGACATCTGGAAAGCAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|19436236|gb|BM952646.1|BM952646
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|211453987|gb|FL038180.1|FL038180
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACC
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACC
EST: gi|213179269|gb|FM196444.1|FM196444
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|9732140|gb|BE510892.1|BE510892
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCGTATCTCAATTGACATCTGGAAAGCAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|22490101|gb|BU050024.1|BU050024
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|19351144|gb|BM895676.1|BM895676
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|33101745|gb|CF061705.1|CF061705
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCGTATCTCAATTGACATCTGGAAAGCAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|18655285|gb|BM500090.1|BM500090
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|60358249|gb|DN225222.1|DN225222
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCGTATCTCAATTGACATCTGGAAAGCAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|14204220|gb|BG837897.1|BG837897
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
EST: gi|87153521|gb|DY398310.1|DY398310
EST:     ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAG                         GTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA
genomic: ATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 189

CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAACCTGTTGGTACAATGGCTTACATGGGCAATGTACAATATCTGATGCAAT


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 536

CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAACCTGTTGGTACAATGGCTTACATGGGCAATGTACAATATCTGATGCAAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 797

CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAACCTGTTGGTACAATGGCTTACATGGGCAATGTACAATATCTGATGCAAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 847

CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgt ... gaacctgcagGTTGCAAGGATTCTAATGAAGACCTTATCTCAATTGACATCTGGAAAACAACCTGTTGGTACAATGGCTTACATGGGCAATGTACAATATCTGATGCAAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgtttgtatgtttctgatggcactagccaataatcgtagttttggctactactagttgagtatgtgcgacatgacagattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA