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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGTCTGATGAgtaagttgtttgtgcatttacaacctcatactagtccagtgttttctgtttgttttaggttcagtttcatatactagtccaatgtttactgtttgtttta...

Basic information

species Zea mays
transcript GRMZM5G862959_T04
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148981020|gb|EE027383.2|EE027383
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|29944943|gb|CB815388.1|CB815388
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAAGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|74236008|gb|DT643922.1|DT643922
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|78116253|gb|DV534640.1|DV534640
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|13126562|gb|BG317132.1|BG317132
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|74244628|gb|DT652542.1|DT652542
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGTTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|101384361|gb|EB814225.1|EB814225
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTTTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|113703551|gb|EE681055.1|EE681055
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|149071365|gb|EE159760.2|EE159760
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGTTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|50326335|gb|CO521461.1|CO521461
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTCCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|13126563|gb|BG317133.1|BG317133
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|78084340|gb|DV512733.1|DV512733
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|60345456|gb|DN212429.1|DN212429
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|9733040|gb|BE511792.1|BE511792
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|60396327|gb|DN229196.1|DN229196
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG