1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTTCTGTTGAATGCAATTGCAAACCAACTGCGCTATCCAAATAGCCATACACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgagatgttatttgtatggttcttgctttcttgggttcaatgttgttctttctgtaacaaacaaccttcgcatgctttcacatcccattgcctg...
species | Zea mays |
transcript | GRMZM5G862538_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTGEST: gi|19351618|gb|BM896150.1|BM896150
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTGEST: gi|32934851|gb|CF039663.1|CF039663
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTGEST: gi|32846122|gb|CD985803.1|CD985803
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGEST: gi|37401645|gb|CF638191.1|CF638191
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAG
EST: ACANNTA-TACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTGEST: gi|58029766|gb|CX725193.1|CX725193
genomic: ACA-CTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTGEST: gi|67027758|gb|CO456507.1|CO456507
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
EST: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAG GAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
genomic: CACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgag ... gattaagcagGAGATTATCCAGGAGCAAATAACAAGGGTTCTTCTGGAGCGTCTAATAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCTGTTGAATGCAATTGCAAACCAACTGCGCTATCCAAATAGCCATACACACTACTACTCCTTCATCATTCTGCATCTATTTGCTGAGGCTACCCAGgtattgtgagatgttatttgtatggttcttgctttcttgggttcaatgttgttctttctgtaacaaacaaccttcgcatgctttcacatcccattgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaacaa