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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc...

Basic information

species Zea mays
transcript GRMZM5G850355_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgc---aacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc
||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||  |    |    ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||                     
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcag---------------------

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G17810.2 (Glycine max), 5'ss of exon 9
-------------------------------------ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc----
                                      |||||||| |||||||| |||||||||||  ||||||| ||||| |||||| |||| ||||||||   | |    | ||   ||    ||||||       ||||||| |||  ||    |  || |  |   |  |  |  ||| | || | | |          
TATCATTTCTATGGTTGACTTGATTGTCCACTTACAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatt-tcaagttta---tgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G41330.1 (Glycine max), 5'ss of exon 10
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatt-gcaacccacttgtagttgcttagtttaaaacatcctaaatagttact---aattggttctgcatcttggacttgcagatatgaggggcaaatttcctc
 |||||||| |||||||| |||||||||||  ||||||| ||||| |||||| |||| ||||||||   |||   || |   ||||   |    ||||  ||  ||||   ||| |   |||    | |  | ||   |||  |   || ||||  ||||  |    
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGGgtaggagcatgacattccaagtt-tatgcactaaataattataaaaccttaatgaaaatgacatgtttaactattactgtccattaggaggcccaaacatt---

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc----
 |||||||| |||||||| |||||||||||  ||||||| ||||| |||||| |||| ||||||||   | |    | ||   ||    ||||||       ||||||| |||  ||    |  || |  |   |  |  |  ||| | || | | |          
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatt-tcaagttta---tgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G25940.2 (Glycine max), 5'ss of exon 9
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatt-gcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc-
 |||||||| |||||||| |||||||||||  |||||||  |||| ||||||||||| ||||||||   |||  ||| ||  ||||   |    |||||  |  |  ||| |   |  ||  ||     ||||     | || || | |    |  |        
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACATCAATATTGACTTTGAAGGAAGGgtaggagcatgccattttaagtt-tatgcactaaaagttattttatattatttggttattttcatctctttttggt-caaattttattctcctaccataagt

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT1G79210.1 (Arabidopsis thaliana), 5'ss of exon 10
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc
 |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||     | |    ||       |||| ||||    ||    |  ||||   ||||  |       ||   || | |   | |      ||         
GTACACAGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGGgtg----agcatttttaccaaaacttaatttactttatttccag-agttcagaatttctcaaaagcctataacctccgtgtcttttca-cag--------

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT1G16470.1 (Arabidopsis thaliana), 5'ss of exon 10
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgta--ttgcaacccac-ttgtagttgcttagtttaaaacatcctaaatagttactaattggt-tctgcatcttggacttgcagatatgaggggcaaatttcctc
 |||||||| || ||||||||||| |||||||| ||||| || ||  |||| ||||||||||||||  |   || | || || |  ||    |||      | |  |||  ||     | ||  | |    |  |   |||  ||| | |||  |  | ||| |   
GTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGgtaagtacaaatctacattattattagaaagtagttcgcctgataatcagagttcacttcatattcatagatcacactctcag-tgtgactgatagattac---

upper sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 9
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagat-atgaggggcaaatttcctc--------
 ||||| || ||||||||||||||||||||  ||||||| || ||||||||  | || || ||||||   |  |  |||  | ||  ||  ||| |||  ||      || ||   | || ||    |   |  |   ||| || | || |     |  |  ||        
GTACACTGATGATATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtat---atgcatcttaaacttcttttcttttaaatttc------agctaacgaatgtttgaaaactatcaaaaggcacatcaagaagctttgaacttatctgttgttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6031332|gb|AW076189.1|AW076189
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32931645|gb|CF036457.1|CF036457
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|213174021|gb|FM192687.1|FM192687
EST:     TGGAACTTGATGATGCCANNNCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: TGGAACTTGATGATGCCA-TCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6653876|gb|AW267281.1|AW267281
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32930042|gb|CF034854.1|CF034854
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5762225|gb|AI967273.1|AI967273
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211253078|gb|FL452731.1|FL452731
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|56382484|gb|CV985153.1|CV985153
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGGAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32932932|gb|CF037744.1|CF037744
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|78021721|gb|DV490108.1|DV490108
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAG-                         ATATGAGGGGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGC
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32849719|gb|CD989400.1|CD989400
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32931156|gb|CF035968.1|CF035968
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATT
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATT
EST: gi|5108080|gb|AI739793.1|AI739793
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6020496|gb|AW065424.1|AW065424
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|9953259|gb|BE639842.1|BE639842
EST:     CTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: CTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|4572854|gb|AI586503.1|AI586503
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|12967997|gb|BG264944.1|BG264944
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5525504|gb|AI861397.1|AI861397
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32942863|gb|CF047682.1|CF047682
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211302508|gb|FL360538.1|FL360538
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATWTGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211062081|gb|FL465317.1|FL465317
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5819357|gb|AI987563.1|AI987563
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5597152|gb|AI891355.1|AI891355
EST:     ATGGAACTTGATGATGCCATCCCCCCTGCAATTTTGNCTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211246869|gb|FL472890.1|FL472890
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|33093559|gb|CF053553.1|CF053553
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32908068|gb|CF012881.1|CF012881
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 1493

ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1191

ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1286

ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1007

ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG