Sequence
atgc intronic sequence ATGC exonic sequenceTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCGgtaattaagcttccgttacccctccagactcgctctcagtctcagctgctcgtaacacaccaccccggccctgaacctgtctcggttggtttgctttggttttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G836250_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g64660.4 (Oryza sativa), 5'ss of exon 8
TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCGgta---attaagcttccgttacccctccagactcgctctcagtctcagctgctcgtaacacaccaccccggccctgaacctgtctcggttggtttg-ctttggttttgtag
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TATGGTTGCTGATGTCCACCGTACGTTGCTATATGGAGGAGTATTTTTGTACCCTGCAGACAAGAAGAGCCCAAATGGAAAACTCCGgtacacattaagcctactctcggcatctcacttcgcttatggt----acttccaatttcatattga--------taaacaattctgaattcaccaaatcttggaattacag
upper sequence: GRMZM5G836250_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 10
TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCGgtaattaagcttccgttac-ccctccagactcgctctcagtctc---------agctgctcgtaacacaccaccccggccctgaacctgtctcggttggtttgctttggttt-tgtag-----
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CATGGTAGCTGATGTCCACCGCACATTACTTTACGGTGGTATCTTTTTGTACCCTGCTGATAAGAAGAGCCCCAACGGAAAACTGCGgtaagta--ctgatgtttcaccttcctctctctccctcaacttctcaaaacaaatttgcaaatgcagatttacaacaacaattaatttttgtgactgaatttggtttaacttgtatggaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78106829|gb|DV525247.1|DV525247EST: GGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCG TATCCTGTACGAAGTTTTCCCCATGTCGTTCCTAATGGAGCAGGCAGGAGG
genomic: GGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCGgtaattaagc ... ggttttgtagTATCCTGTACGAAGTTTTCCCCATGTCGTTCCTAATGGAGCAGGCAGGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCGgtaattaagcttccgttacccctccagactcgctctcagtctcagctgctcgtaacacaccaccccggccctgaacctgtctcggttggtttgctttggttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC