1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaattttttctacattttttataatgttctaaaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcag
species | Zea mays |
transcript | GRMZM5G835235_T04 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|32865498|gb|CF005180.1|CF005180
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: AATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|33093876|gb|CF053870.1|CF053870
genomic: AATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|20803001|gb|BQ294051.1|BQ294051
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|78544269|gb|DV621767.1|DV621767
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: AGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|22543122|gb|BU093560.1|BU093560
genomic: AGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|60349422|gb|DN216395.1|DN216395
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTGCACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|18172726|gb|BM348114.1|BM348114
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: GTTTAAGTTCCCACAAATC-AAGNCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|30087357|gb|CB885563.1|CB885563
genomic: GTTTAAGTTCCCACAAATCAAAG-CTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: CTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|32865481|gb|CF005163.1|CF005163
genomic: CTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|32865499|gb|CF005181.1|CF005181
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|18170275|gb|BM340115.1|BM340115
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: TCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|26456580|gb|CA828163.1|CA828163
genomic: TCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaattttttctacattttttataatgttctaaaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcag
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