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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccgatcatgcaccattttctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacag

Basic information

species Zea mays
transcript GRMZM5G834205_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G834205_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g01740.2 (Oryza sativa), 5'ss of exon 9
---TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccgatcatgcaccattttctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacag
   | |||||||| ||||||||||||||||| || || ||| |||||||||||| | | ||||| |||||||| |||||   ||| ||||| || || |||||||| |     || | |   ||||  |     |  ||||| | |  |||  ||||  |||| |  ||| || || ||||
TTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGA---TGCCGAAAGCCTTTACCGGAGgtatgtgtattcgttctttatttcttc----agtggtggaaggtggccaattactaaatttt--cctcaccaacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079652|gb|EE168649.2|EE168649
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|211390577|gb|FL303486.1|FL303486
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|93015304|gb|EB640824.1|EB640824
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|93015622|gb|EB641142.1|EB641142
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149083864|gb|EE173239.2|EE173239
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|71428013|gb|DR809063.1|DR809063
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|78107222|gb|DV525640.1|DV525640
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|71421501|gb|DR805467.1|DR805467
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149102741|gb|EE288090.2|EE288090
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|71320275|gb|DR796886.1|DR796886
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|71302875|gb|DR787549.1|DR787549
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76291817|gb|DV031385.1|DV031385
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|78116688|gb|DV535075.1|DV535075
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76282167|gb|DV021735.1|DV021735
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|101391432|gb|EB817651.1|EB817651
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|148952812|gb|EC898804.2|EC898804
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76021099|gb|DT948269.1|DT948269
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|71326004|gb|DR799684.1|DR799684
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76924362|gb|DV169916.1|DV169916
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|89249854|gb|DY621640.1|DY621640
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|148938286|gb|EC882590.2|EC882590
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|86472430|gb|DY238800.1|DY238800
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|211390578|gb|FL303487.1|FL303487
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149085134|gb|EE174639.2|EE174639
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76927739|gb|DV171347.1|DV171347
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149088092|gb|EE287276.2|EE287276
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149059924|gb|EE157051.2|EE157051
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|84970062|gb|DW468434.1|DW468434
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|74245587|gb|DT653501.1|DT653501
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|78091790|gb|DV520164.1|DV520164
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149085242|gb|EE174748.2|EE174748
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|50339159|gb|CO534285.1|CO534285
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|76281749|gb|DV021317.1|DV021317
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|149105965|gb|EE291598.2|EE291598
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|48690727|gb|CO049262.1|CO049262
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCACTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: gi|93017402|gb|EB642922.1|EB642922
EST:     AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG                         ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 174

TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 95

TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 127

TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 78

TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCAGTAGCTTCTAATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccgatcatgcaccattttctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG