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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaatgccatttgaccccatgtcttttggttctctcccagcaaaatcatacccgtgttgattgcttggatgctaatgcctctgtaaaacttgcag

Basic information

species Zea mays
transcript GRMZM5G833389_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 9
TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa-tgc-catttgaccccatgtctt--------------ttggtt--------------------ctctcccagcaaaatca------------tacccgtgttg--attgcttgga--tgctaatgcctctgtaaaacttgcag
||| ||||||||||||||||||||||| ||||| |||||| ||||  | ||||||||||| |   ||||||||||||||||||| ||||| |||||||||||  |||||| ||  ||| | |  | |||| ||              ||| ||                     || ||| | || | ||            |     |||||   ||| || ||  |  |||||||| | ||||||||||||
TGGAAATGCTGAGGATATGGTGAAAAGAAACAAATCTGGCCAGCCACTTCTCGACAAGAACGGTGGTATCCAGATTCTTACCTCACATACTCTTCAGCCGgtacgtgcaaatgttcatataatgctatgttttatgttgtgtgtttgttgattactgcgatgcaccttacatattcgccctgtaataccaagtagagtgctttttttttgttgttgttgatttgagtttttaatgcctatataaaacttgcag

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S145_164V6.2 (Physcomitrella patens), 5'ss of exon 8
TGGCAATGCTGAGGATATGGTGAAAAGGAAC---AAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaatgccatttgaccc-catgtcttttggt-tctctcccagcaaaatcatacccgtgttgattgcttg-gatgctaatgcctctgtaaaacttgcag---------------------------
   |||||||||||||||||||||||||||    ||| | ||    ||  |    || ||| | |       |||||| || || || || ||       ||||| | ||   ||  ||||||    || || || |    | | |  ||  ||     |   |   || |  || |  ||  |   || |  |  | ||   ||                             
---CAATGCTGAGGATATGGTGAAAAGGAATCCGAAGACCGGTGCACCCATTAAAGATAAGCAAGGGAACTACCAGATACTCACGTCACACACTTGCGCTCCGgtaattgt--tgatatttgaattgcaagttttctctcctttttttcaataatcctctgaacaatttcaccgcctaagacacctgtgtcgatagataatgcgctaaatatttggttgcgtggttgcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37401358|gb|CF638042.1|CF638042
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|51592466|gb|CV071612.1|CV071612
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGNATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGNCTTCACCCTGGAGTGTAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211110874|gb|FL478096.1|FL478096
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCTTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6865073|gb|AW360423.1|AW360423
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37378208|gb|CF625776.1|CF625776
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60356110|gb|DN223083.1|DN223083
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|17930031|gb|BM266991.1|BM266991
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|32945368|gb|CF050187.1|CF050187
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCACGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|18167820|gb|BM337660.1|BM337660
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60398692|gb|DN231508.1|DN231508
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211021747|gb|FL471425.1|FL471425
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37385277|gb|CF629772.1|CF629772
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTTAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67016297|gb|CO445046.1|CO445046
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|78544037|gb|DV621535.1|DV621535
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211172242|gb|FL456942.1|FL456942
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|31360915|gb|CD445272.1|CD445272
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20300715|gb|BQ163658.1|BQ163658
EST:     TCGACAAGAATGNCCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211010286|gb|FL457989.1|FL457989
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6827946|gb|AW331589.1|AW331589
EST:     TCGACAAGAATGGCCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37393998|gb|CF634267.1|CF634267
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|89106581|gb|DY576798.1|DY576798
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211406276|gb|FL082336.1|FL082336
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|22490895|gb|BU050818.1|BU050818
EST:     TCGACAAGAATGCCCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211110873|gb|FL478095.1|FL478095
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37392229|gb|CF633363.1|CF633363
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6538839|gb|AW224978.1|AW224978
EST:     TCGGCAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60336942|gb|DN203915.1|DN203915
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37375505|gb|CF624191.1|CF624191
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67025128|gb|CO453877.1|CO453877
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211244471|gb|FL127868.1|FL127868
EST:     TCGACAAAAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCCGCCG                         GTCCCCGGTTGCCATTGGAGGCCCTGGGCCTTCCCCCTGGAGGGAAA
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCC-GGTTGCCATTGGAGGCCCTGG-CCTTCACCCTGGAGTGAAA
EST: gi|67022444|gb|CO451193.1|CO451193
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCT-GTCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211406277|gb|FL082337.1|FL082337
EST:     TCGACAAGAATGACCGTATCCAGATYCTTACCTCBYATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|40334760|gb|CK368830.1|CK368830
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19436777|gb|BM953187.1|BM953187
EST:     AATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: AATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19436349|gb|BM952759.1|BM952759
EST:     CGTATCCAGATTCTTACCTCCCATACCCTTCAG-CG                         GT-CCGGTTGCCATTGGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCG
genomic: CGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATT-GGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCG
EST: gi|83278457|gb|DV942465.1|DV942465
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|4646599|gb|AI491406.2|AI491406
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20513060|gb|BQ280246.1|BQ280246
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|32857459|gb|CD997140.1|CD997140
EST:     CGACAAGAATGACCTGNAT-CATATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: CGACAAGAATGACC-GTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|44901343|gb|CK827888.1|CK827888
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67011723|gb|CO440472.1|CO440472
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|28909600|gb|CB331007.1|CB331007
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19057645|gb|BM736312.1|BM736312
EST:     TGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20300345|gb|BQ163288.1|BQ163288
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|71330937|gb|DR802275.1|DR802275
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 138

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 487

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 211

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 233

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAGTCTGGCAAGCCGTTGCTCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA