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TTAACAAGATTAAGTGCAGGTAATTGTTGGTATAGGAGCAAAACCAGTTGTCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttccatgccaaagttaattaggcttattaaatctactgctctgcatcataatagttgttcaaagtttctatggaactatttcctttttcttttc...
species | Zea mays |
transcript | GRMZM5G828229_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|60355749|gb|DN222722.1|DN222722
genomic: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|86467590|gb|DY233960.1|DY233960
genomic: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|14190979|gb|BG833209.1|BG833209
genomic: TCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: GTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|60341998|gb|DN208971.1|DN208971
genomic: GTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: CCCTAAAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|148933345|gb|EC877007.2|EC877007
genomic: CCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: AAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGATEST: gi|14190977|gb|BG833207.1|BG833207
genomic: AAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
EST: AGCTGTTGGAGTTAACCCT-AAGTTGGTGGAATAGAG GTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
genomic: AGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttcc ... atttttgtagGTTGATTCCTTGTTCAGAACTAGTGTACCTGGCATCTTTGCAATTGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAACAAGATTAAGTGCAGGTAATTGTTGGTATAGGAGCAAAACCAGTTGTCAGCCCGTTTGAAGCTGTTGGAGTTAACCCTAAAGTTGGTGGAATAGAGgtttgtttccatgccaaagttaattaggcttattaaatctactgctctgcatcataatagttgttcaaagtttctatggaactatttcctttttcttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA