1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCTACATGTATGGTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaaacaatattttttctaacaacttttaagttattttgtttcataaaatattggcatgcatgcacagaattgacctgtttcattttgttgatttcag
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: NNNNNNNCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|76293280|gb|DV032848.1|DV032848
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|71761327|gb|DR959264.1|DR959264
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|7162447|gb|AW520069.1|AW520069
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGGCACEST: gi|6194775|gb|AW146879.1|AW146879
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|78114997|gb|DV533385.1|DV533385
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|71758092|gb|DR956029.1|DR956029
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACACEST: gi|50322420|gb|CO517546.1|CO517546
genomic: GTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
EST: ATTGATTCAGCAG TGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
genomic: ATTGATTCAGCAGgtatcttgaa ... ttgatttcagTGTAGCAATGAGGATGAGATAGTTTCTGTTATAGCACATGAACTTGGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACATGTATGGTTTTTTCAAGAACAAGCGCATAGTACTCTATGACACATTGATTCAGCAGgtatcttgaaacaatattttttctaacaacttttaagttattttgtttcataaaatattggcatgcatgcacagaattgacctgtttcattttgttgatttcag
- - - - - - - - - - AAGAAC