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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgctattcgtttatttttttttattttttttaacgagagaattcatctctggaaccttgatgctcatacgggtttcctctccaccag

Basic information

species Zea mays
transcript GRMZM5G813363_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 9
TTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgctattcgtttatttttttttattttttttaacgagagaattcatctctggaaccttgatgctcatacgggtttcctctccaccag
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TTGCTTGATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGAgtacgcgttacctcctttaattttgttt--cctagtcaatgggaatact------tcatatcttggagctcatataaactaca-ctccatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872830|gb|EB402787.1|EB402787
EST:     GATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATNAACGA                         GAGGCATGACTTAACAGATTCGTTAAAGAAGCTGCAATGCCGCACGCTGAT
genomic: GATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgct ... tctccaccagGAGGCATGACTTAACAGATTCGTTAAAGAAGCTGCAATGCCGCACGCTGAT
EST: gi|71322272|gb|DR797821.1|DR797821
EST:     GATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGA                         GAGGCATGACTTAACAGATTCGTTAAAGAAGCTGCAATGCCGCACGCTGAT
genomic: GATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgct ... tctccaccagGAGGCATGACTTAACAGATTCGTTAAAGAAGCTGCAATGCCGCACGCTGAT