1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTATTTTGCTTCTATGTATAAGAGTTTTGGTAACTTATGCTATGTATTTGGAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttggcctaggtttgttttgaaggagttgcaagctttcatgtattcttttgctcattcgaattctgcaactgcacatgatag
species | Zea mays |
transcript | GRMZM5G812553_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60340406|gb|DN207379.1|DN207379
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|28873884|gb|CB329814.1|CB329814
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|37376011|gb|CF624501.1|CF624501
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|71764065|gb|DR962002.1|DR962002
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|76285904|gb|DV025472.1|DV025472
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|30032066|gb|CB833917.1|CB833917
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|32867364|gb|CF007046.1|CF007046
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|76021472|gb|DT948642.1|DT948642
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCCTAACGTCCCAGCCCTGTGCATAEST: gi|50322460|gb|CO517586.1|CO517586
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCEST: gi|32933409|gb|CF038221.1|CF038221
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGC
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|148976018|gb|EE025877.2|EE025877
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|78105461|gb|DV523879.1|DV523879
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|50334433|gb|CO529559.1|CO529559
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60339858|gb|DN206831.1|DN206831
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|6095485|gb|AW120152.1|AW120152
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: ACATAATAATCAAGATATGAGAATAAAG GTAAATGAGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|78078210|gb|DV506625.1|DV506625
genomic: ACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAEST: gi|78105462|gb|DV523880.1|DV523880
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|91878206|gb|EB408163.1|EB408163
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|71436271|gb|DR817321.1|DR817321
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGACCCTTTTGGGGCCATAATAATCAAGATATGAGAATAAAG GTAAAGGGGGGAGAAGGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60339048|gb|DN206021.1|DN206021
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|67022745|gb|CO451494.1|CO451494
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAAACTGT-CATAACGTCACAGCCCTGTGCATEST: gi|30307230|gb|CD001903.1|CD001903
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAA-CTGTTCATAACGTCACAGCCCTGTGCAT
EST: CAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|29130015|gb|CB380719.1|CB380719
genomic: CAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|78121934|gb|DV540318.1|DV540318
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60356994|gb|DN223967.1|DN223967
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|50334432|gb|CO529558.1|CO529558
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|30087317|gb|CB885525.1|CB885525
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|76285903|gb|DV025471.1|DV025471
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|78121935|gb|DV540319.1|DV540319
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATEST: gi|71298751|gb|DR785364.1|DR785364
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCAT
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|37382504|gb|CF628200.1|CF628200
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG TTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|211361286|gb|FL413661.1|FL413661
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: AAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60355693|gb|DN222666.1|DN222666
genomic: AAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|50322459|gb|CO517585.1|CO517585
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|8102673|gb|AW927320.1|AW927320
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|60359029|gb|DN226002.1|DN226002
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|32867365|gb|CF007047.1|CF007047
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|31406360|gb|CD485092.1|CD485092
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|71764064|gb|DR962001.1|DR962001
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATAEST: gi|67010879|gb|CO439628.1|CO439628
genomic: GAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
EST: GCCTTTTGGGGACATAATAATCAAGATATGACAATAAAG GTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
genomic: GCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttg ... cacatgatagGTAAATGGGGGAGAATGGAGAACTGTTCATAACGTCACAGCCCTGTGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTTTGCTTCTATGTATAAGAGTTTTGGTAACTTATGCTATGTATTTGGAGCTTTAAGAGCCTTTTGGGGACATAATAATCAAGATATGAGAATAAAGgtcaggtttggcctaggtttgttttgaaggagttgcaagctttcatgtattcttttgctcattcgaattctgcaactgcacatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT