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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAATTAAGAGTTATTGTATCTGGAGGTGCTCCTCTAGCTGTACCAGTAGAAGAATTTTTAAGGGTTGTGACATGTGCTTATGTTGTTCAAGGCTATGgtatgcatctttcaatgttgtagttcctttacttagtataatgaagcacctgaggacataatccttttgtgttgcatgcatatgcattgatatttagataataattgcacgtttcgatgtttag

Basic information

species Zea mays
transcript GRMZM5G812228_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812228_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g06350.2 (Oryza sativa), 5'ss of exon 9
GGGAAATTAAGAGTTATTGTATCTGGAGGTGCTCCTCTAGCTGTACCAGTAGAAGAATTTTTAAGGGTTGTGACATGTGCTTATGTTGTTCAAGGCTATGgta--tgcatctttcaatgttgtagttcctttacttagtat--aatgaagcacctgaggacataatccttttgtgttgcatgcatatgcattgatatttagataataattgcacgtttcgatgtttag
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GGAAAACTACGTTTTATCGTGTCTGGTGGTGCCCCTTTATCTGTAGCAGTGGAAGAATTTTTGAGGGTTGTGACATGTGCAAGTGTTGTTCAAGGCTATGgtatatgcttgcttcaccatt-caattcctttaggaagtatttaatcaagcgctt-----cata----tgttggttgatatagtaacacttttaaataaaattatgaaaaaccaacttcag-------