1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACAAAAGCTGAACCACCTATTTACTACATGCCAACTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatcctagtatcttttttctcgaaaagcgcaggagaactgcgccccaaatatatattaggaggaaagaaaaggtctaagaagacccaaaatacaaga...
species | Zea mays |
transcript | GRMZM5G810275_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCCATTGTTGAACAGAACAAGGAAAA- GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|60353254|gb|DN220227.1|DN220227
genomic: CAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|211092934|gb|FL070802.1|FL070802
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: TGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|60355550|gb|DN222523.1|DN222523
genomic: TGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|166543472|gb|EG156333.1|EG156333
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTAEST: gi|67018409|gb|CO447158.1|CO447158
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTA
EST: TCCAGCC-TTGTTGAACAGAACAA-GAAAAG GT-TTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|32803844|gb|CD956080.1|CD956080
genomic: TCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|60357656|gb|DN224629.1|DN224629
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAAEST: gi|60353692|gb|DN220665.1|DN220665
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
EST: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
genomic: CTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatccta ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGATGAGCTGACTCGGTTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAAAGCTGAACCACCTATTTACTACATGCCAACTAAACCAATTATTGACGATCCAGCCATTGTTGAACAGAACAAGGAAAAGgtatatcctagtatcttttttctcgaaaagcgcaggagaactgcgccccaaatatatattaggaggaaagaaaaggtctaagaagacccaaaatacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatacaa