1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTAGGAAGCATGGGCTTGAGATCTCTCAGCCTGGTTTGGAGCCCGATAAAGGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcctgaattaatattgctttaccattgtttagtagccacacacagctatattggtttctggaatggtattttgctttttcacag
species | Zea mays |
transcript | GRMZM5G801369_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|32838018|gb|CD977696.1|CD977696
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|78120790|gb|DV539174.1|DV539174
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: ATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|6021059|gb|AW065987.1|AW065987
genomic: ATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|6601788|gb|AW256229.1|AW256229
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: GGTTTGACATGGCAAATGCCTAACCGAAGAGGTGATCAGGAAGTCCNCAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCNCCATGEST: gi|32917091|gb|CF021903.1|CF021903
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: TAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|32839016|gb|CD978697.1|CD978697
genomic: TAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATGEST: gi|12973204|gb|BG268364.1|BG268364
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
EST: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAA AGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
genomic: GGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcct ... tttttcacagAGTAACTGAGGAGAGACCTGGCTGGTGTAGCGACCCTCACCTGCCACCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGGAAGCATGGGCTTGAGATCTCTCAGCCTGGTTTGGAGCCCGATAAAGGTTTGACATGGCAAATGACTAAACGAAGAGGTGATCAGGAAGTCCACAAgtgagctcctgaattaatattgctttaccattgtttagtagccacacacagctatattggtttctggaatggtattttgctttttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG