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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcagaacttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag

Basic information

species Zea mays
transcript GRMZM2G704093_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 10
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatt-tttgcctcattgctttgatacatactct------ctgcagaacttgttccggttagatagc---tttgtagacctgat-ctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||||||||||||||| || || |||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||  ||   | |||||      ||| | |  |   ||      |||   | | ||||| | ||| | | |   | | || |||| || || ||  ||                                                                                       
AATTATCCAAAGAAATAAATGAGTCTTTCAAGCAATCATCTCAAGCAAGGACAAAGCTTCCATCTGGCATTGAAATGAGTGTTCACGTGCTTACAACAGGgtaggtaacatgtgccttgccatttttacatgtgtgctggtttactgagtagcatgttctgtttacacaacacttgtctaaacctaatactgatagatag-------------------------------------------------------------------------------------

upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatac-tctctgca-gaacttgttccggtt---agatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||| ||||||||||| ||||||||||  || ||||| || || ||| |||| ||| | ||||| ||||||||||||||||||||  | || |||||||||   || |  | ||    | |  ||| |||  | | ||   |    |||   | |    |||||| ||||| | | |    ||||  || ||       ||    | || | | | | |  |||||  |    |      | ||   |   |                        
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatatatatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgt-gtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag--------------------

upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcagaacttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||| ||||||||||| || |||||||  || ||||| || || ||| |||| ||| | ||||| ||||||||||||||||||||  | || |||||||||   ||| || ||  |       ||| ||| | | ||      | | |   |  |||||| ||| | ||   ||    | |   | | |   |      ||                                                                      
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagc-tttgtgtcttctcatc---atatata-tatgtgtgtgtgtggat--agaaagatagatttctgga---gaatctaagtg-gagttggattagtgcag----------------------------------------------------------------------

upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcaga--acttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||| |||||||||||||| || |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||||||||||||  | ||||| |||||||   | ||  | | ||    | ||  ||| | | |    |  | || |||     ||  |   |  | |   | ||   |||  ||                                                                                      
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag-----------------------------------------------------------------------------------

upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 11
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctc--tgcagaacttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||| |||||||||||||| || ||||  || ||||| || ||||||||||| || || || || ||||||||||||||||||||  | ||||| |||||||   | ||  | | ||    | ||  ||| | |   ||    |||| || |    ||  |   |  | |   | ||   |||  ||                                                                                      
AATTATCAAAAGAAATAAACGAGTCCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCCGGGATTGAAATGAGTGTTCATGTTTTGACAACTGGgtaaactgtgttttccctttctcattattgataattttcatgtgctacttttttcccccagtgaatctaattgcaattattggatgggtgcag-----------------------------------------------------------------------------------

upper sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 10
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcagaacttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag
||||||| ||||| ||||| || || ||||  |||||||| ||||| |||||||| |||||  |||| ||||| ||||||||||||||  | ||||| |||||| | | | |   |   |  | |  ||||     ||   | |||    |||   ||  ||      ||   ||  ||  | | || |      |  |   ||       |||||| ||   |                                                  
AATTATCTAAAGAGATAAATGAGTCCTTCAAACAATCATCGCAAGCCAGGACAAAACTTCCAACAGGAATTGAGATGAGTGTTCATGTCTTAACAACTGGgtaattctatcttattttgttttctattacac---ttcaagaaaacacagtcctaatatttaatcacttatttct--tccaaggaatttaacttattatttgagt------ggctgggctacag--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32809761|gb|CD961995.1|CD961995
EST:     ACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGG                         CTATTGGCCTACATATCCACCAATGGACGTGAAACTCCCACACGAACTGAA
genomic: ACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatattt ... tgatttacagCTATTGGCCTACATATCCACCAATGGACGTGAAACTCCCACACGAACTGAA
EST: gi|31357483|gb|CD441840.1|CD441840
EST:     ACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGG                         CTATTGGCCTACATATCCACCAATGGACGTGAAACTCCCACACGAACTGAA
genomic: ACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatattt ... tgatttacagCTATTGGCCTACATATCCACCAATGGACGTGAAACTCCCACACGAACTGAA