Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGTTCTGCTATTGCGTAATGGACCAGTTAGTCCTAATTACCTTACAGCCTCATCAAAAGTTCGCGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtaccatctaatatcgctagtgtgttttttccctggttgaaccatagagtagcattctgccccactgtaggcttttaactatgaag

Basic information

species Zea mays
transcript GRMZM2G704032_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704032_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 9
AGGTTGTTCTGCTATTGCGTAATGGACCAGTTAGTCCTAATTACCTTACAGCCTCATCAAAAGTTCGCGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtaccatctaatatcgctagtgtgttttttccctggttgaaccatagagtagcattctgccccactgtaggcttttaactatgaag
|||||||||| ||||| || ||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||| ||||||||||||  || | ||| |  |  || | |  ||| ||   ||     |    |  | |  || |  |   ||  ||||  |  |   ||
AGGTTGTTCTACTATTACGAAATGGACCAGTTAGTCCTAATTACCTTACAATCTCATCAAAAGTCCGTGATTGCTTTGCTTTTCTTCATCGTGGTTCAAGgtaatatttgatagctattatgagctacttctctatatg-----tttgttttcttgttggcttatctta--ctttgcatcacacag