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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGTTCTGCTATTGCGTAATGGACCAGTTAGTCCTAATTACCTTACAGCCTCATCAAAAGTTCGCGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtaccatctaatatcgctagtgtgttttttccctggttgaaccatagagtagcattctgccccactgtaggcttttaactatgaagcttctttgtccatgtgttgtgcag

Basic information

species Zea mays
transcript GRMZM2G704032_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704032_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 9
AGGTTGTTCTGCTATTGCGTAATGGACCAGTTAGTCCTAATTACCTTACAGCCTCATCAAAAGTTCGCGATTGCTTTGCTTTTCTTCATCATGGTTCAAGgtaccatctaatatcgctagtgtgttttttccctggttgaaccatagagtagcattctgccccactgtaggcttttaactatgaagcttctttgtccatgtgttgtgcag
|||||||||| ||||| || ||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||| ||||||||||||  || | ||| |  |  || | |  ||| ||   ||     |    |  | |  || |  |   ||  ||||  |  |   ||                        
AGGTTGTTCTACTATTACGAAATGGACCAGTTAGTCCTAATTACCTTACAATCTCATCAAAAGTCCGTGATTGCTTTGCTTTTCTTCATCGTGGTTCAAGgtaatatttgatagctattatgagctacttctctatatg-----tttgttttcttgttggcttatctta--ctttgcatcacacag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107037|gb|EE188931.2|EE188931
EST:     CATGGTTCAAG                         GCTTTTTGGTTGGTGGTCTATTGATGAAGGGAGCAAGGAAGAACAAGCCCG
genomic: CATGGTTCAAGgtaccatcta ... tgttgtgcagGCTTCTTGGTTGGTGGTCTATTGATGAAGGGAGCAAGGAAGAACAAGCCCG