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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGGGCTGGGAATTATGGAATGTGCGGACGTGCATATAGCCCAAACTTTTTATTTCTTTGGCCAACTGCTAGGATATCTGTTATGGGTGGCATCCAGgtaagagccctcacacttgttattgctgttgcagcaactagactgacttaactaatttagaagtaaccatattatcattgcctggcagagaatgtctata...

Basic information

species Zea mays
transcript GRMZM2G702490_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 7
TTTTGGGGCTGGGAATTATGGAATGTGCGGACGTGCATATAGCCCAAACTTTTTATTTCTTTGGCCAACTGCTAGGATATCTGTTATGGGTGGCATCCAGgtaagagccctcacacttgttattgctgttgcagcaactagactgacttaactaatttagaagt-aaccatattatcattgcctggcagagaatgtctata
|||||| ||||| || ||||||||||| ||||||||||| || ||||| ||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||| | |        |||||  | | | |      |  |   | ||||    |||||   ||| ||  || | || ||||         | || || || 
TTTTGGTGCTGGAAACTATGGAATGTGTGGACGTGCATACAGTCCAAATTTTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaacttatctttttgttgattcagcttgtcatataacttttacttgtacaatttcctagtcaagaatttcatgattgtaattattggcat-tccatt

upper sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 7
lower sequence: EFJ11721 (Selaginella moellendorffii), 5'ss of exon 8
TTTTGGGGCTGGGAATTATGGAATGTGCGGACGTGCATATAGCCCAAACTTTTTATTTCTTTGGCCAACTGCTAGGATATCTGTTATGGGTGGCATCCAGgtaagagccctcacacttgttattgctgttgcagcaactagactgacttaactaatttagaagtaaccatattatcattgcctggcagagaatgtctata
 |  || || ||||| |||||||||||||||||||| || || || |||||  | ||||| |||||||  |||||||| || || ||||| |||| ||||||| |   | ||| | | ||| |   ||   |||| |      |      |  |                                              
CTACGGCGCCGGGAACTATGGAATGTGCGGACGTGCTTACAGTCCCAACTTCCTTTTTCTGTGGCCAAACGCTAGGATCTCGGTCATGGGAGGCAGCCAGgtatgtttcttcata-tagttttacttgagtcagcgagagcttttttccgatcag---------------------------------------------

upper sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 7
lower sequence: EFJ22508 (Selaginella moellendorffii), 5'ss of exon 8
TTTTGGGGCTGGGAATTATGGAATGTGCGGACGTGCATATAGCCCAAACTTTTTATTTCTTTGGCCAACTGCTAGGATATCTGTTATGGGTGGCATCCAGgtaagagccctcacacttgttattgctgttgcagcaactagactgacttaactaatttagaagtaaccatattatcattgcctggcagagaatgtctata
 |  || || ||||| |||||||||||||||||||| || || || |||||  | ||||| |||||||  |||||||| || || ||||| |||| ||||||| |   | ||| |    ||      ||| |   |   ||  ||| ||   ||    |  ||                                     
CTACGGCGCCGGGAACTATGGAATGTGCGGACGTGCTTACAGTCCCAACTTCCTTTTTCTGTGGCCAAACGCTAGGATCTCGGTCATGGGAGGCAGCCAGgtatgtttcttcatatagttttaaagagttccttgagtcagcgtgagttt-ttatccgatcag-------------------------------------