Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAAAGgtaatttagttgtacctaaaacataattaaagtcacctttacctgaacctgtccaaattgtgattacgacatcattttcttgatgttag

Basic information

species Zea mays
transcript GRMZM2G485898_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G485898_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g32920.1 (Oryza sativa), 5'ss of exon 9
TGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAAAGgtaatttagttgtacctaaaac----ataattaaagtcacct-ttacctgaacctgtccaaattgtgattacgacatcattttcttg-atgttag
||  ||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||  ||| | | | || |     | | |  | ||| |  ||   ||    |   |||    |  |        | |||||||   ||  ||
TGGAGGTTGGAAAGTTGTTGCAAGCTTTGAGGGGAAGTTCCCAACCAGGATCAAACAACTCCCTCTGGACAAGCATTTTGATATGAAAAATGTGAAAAGGgtaattcggttattcttgaagcttctgttacttgactcatcaattgtatggttataatcaatagatattccttttgcctttttcttttgtgccag

upper sequence: GRMZM2G485898_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA07G40300.1 (Glycine max), 5'ss of exon 9
TGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAAAGgtaa-----tttagttgtacctaaaacataattaaagtcacctttacctgaacctgtccaaattgtgattacgacatcattttcttgatgttag----------------
|   |||||||||||||||||||||||||| || || ||||| |  || ||||| ||||| ||| | || |  || ||||| || || |||||||| | |||||      |   ||| |  |   | ||  || | ||    ||||  | |   | | |   |     ||  |        ||||  ||                     
TAATGGTTGGAAAGTTGTTGCTAGTTTTGAAGGGAATTTTCCTAACAGAATCAAGCAACTTCCTATCGACAGACACTTTGACATAAACAATGTCAAGAGGgtaaaccttctcccttgaatttgtcatattgtttaggtagaatttagttcattttattctcttgacacttgaggtgcttgcttctatattcccattttggcttatttcag

upper sequence: GRMZM2G485898_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
TGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAAAGgta--atttagttgtacctaaaacataattaaagtcacctttacctgaacctgtccaaa-----ttgtgattacgacatcattttc---ttgatgttag
|  |||||||||||||||||| |||||||| || || || || |  |||||||| || |||||| | || || ||||||||||| || ||||||||||  |||   ||   || ||   | |    || |   ||  | ||||  |       |  ||      |  || || | |  |   |||    |||||   ||
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag