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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGGAGAGCGCTACTCTGAAAATGAGGTGTACTGCATGCTGCACGCGGCAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgataaaaactaaaatttttacgtctccatatccattgacaaagctagattgcatctatgcttacgccttctatcttttgaataaaag

Basic information

species Zea mays
transcript GRMZM2G480607_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G480607_T06 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 9
ACTCGGAGAGCGCTACTCTGAAAATGAGGTGTACTGCATGCTGCACGCGGCAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagt-------gataaaaactaaaatttttacgtctccatatccattgacaaagctagattgcatctatgcttacgcct---tctatcttttgaataaaag
  | || || ||||| | |||||||||||| || |||||| |||| || |||||  | |||||| |||| || || ||||||||||| |||||||| |||||||||         |   | ||  |||| ||  ||    | |  ||||   | | || |||    |  ||||||   | |   | |||||||||  ||    
CTTGGGTGACCGCTATTGTGAAAATGAGGTCTATTGCATGTTGCATGCAGCAAAACTTTGCATACGACGTGATCCTCATTCAAGGCCCCGCATGTCTCATgttagttttttccagttctatctgcaattattttgttcttaga--cattagtaca-ctggatcttctaaatgcttttcctttattttatcttttgtttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661817|gb|BM501594.1|BM501594
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|18963101|gb|BM660240.1|BM660240
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|88750768|gb|DY534909.1|DY534909
EST:     ACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: ACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|60349296|gb|DN216269.1|DN216269
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|29129926|gb|CB380630.1|CB380630
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|18655098|gb|BM499903.1|BM499903
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|149095516|gb|EE181172.2|EE181172
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
EST: gi|18963177|gb|BM660284.1|BM660284
EST:     CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCAT                         GTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT
genomic: CAAACTTGTGCATAAGACGCGACCCACATTCAAGGCCTCGCATGTCCCATgttagtgata ... tgaataaaagGTTCTTCGCATTCTTGAGGGTGACATGGTCGTGGAATCTGGTGGTTCTGTT