1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCCGCACTGTATGACAAACTCCTCGTTTCAGAGGAACTGCATCCATTGGGTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtccagtccaaaagatgatacatttcttacaccttgttttcaactaacattccaaccttttactatatacaatgaactccattttggtttctcag
species | Zea mays |
transcript | GRMZM2G473001_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|33466458|gb|CF243507.1|CF243507
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTTTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTTTACCTGAAGCAGCGGEST: gi|60401362|gb|DN234169.1|DN234169
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|12967885|gb|BG264832.1|BG264832
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|33098536|gb|CF058496.1|CF058496
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|211185310|gb|FL189476.1|FL189476
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|32940542|gb|CF045361.1|CF045361
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|50332031|gb|CO527157.1|CO527157
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTTTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTTTACCTGAAGCAGCGGEST: gi|67014093|gb|CO442842.1|CO442842
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|50332032|gb|CO527158.1|CO527158
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|32846987|gb|CD986668.1|CD986668
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|33098960|gb|CF058920.1|CF058920
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACCAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGEST: gi|12968164|gb|BG265111.1|BG265111
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCAC-AGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|12968178|gb|BG265125.1|BG265125
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|12968179|gb|BG265126.1|BG265126
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|33466459|gb|CF243508.1|CF243508
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGGEST: gi|32844626|gb|CD984307.1|CD984307
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
EST: GTGAGAAGCTGAGGGCCACCTATGAGGAAACCCAGAAGCTTCTACTTCAG GTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
genomic: GTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtc ... ggtttctcagGTTGCTGGGCACAGGGATCTTCTGGAAGGTGACCTCTACCTGAAGCAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCGCACTGTATGACAAACTCCTCGTTTCAGAGGAACTGCATCCATTGGGTGAGAAGCTGAGGGCCAACTATGAGGAAACCCAGAAGCTTCTACTTCAGgtctgttgtccagtccaaaagatgatacatttcttacaccttgttttcaactaacattccaaccttttactatatacaatgaactccattttggtttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC