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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACAGCTTTTATAATTCAAGCATTTTGTGCTACAGATCTTGTCAATGAGTATGGTCCAACTATTCAGAGAGCCCATGAGTTTATAAAACATTCGCAGgtttcttatttttatgctcaaataatctaaatatataaaaataaccatttcacatagtaaactaatgttacttgatatgcttatttggatccaag

Basic information

species Zea mays
transcript GRMZM2G468929_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g04750.1 (Oryza sativa), 5'ss of exon 4
GGAGACAGCTTTTATAATTCAAGCATTTTGTGCTACAGATCTTGTCAATGAGTATGGTCCAACTATTCAGAGAGCCCATGAGTTTATAAAACATTCGCAGgtttcttatttttatgctcaaataatctaaatatataaaaataaccatttcacatagtaaactaatgt-tacttgatatgcttatttggatccaag
||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| | | ||| |||||||||||||||||||  | ||| |||| |||||     || | ||   |  ||||||||||||  |||||  |||| | || | |   ||| | |   | || |  |||| |||  ||| |      
GGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCCATGAGTTCTTGAAAAATTCACAGgtacagaatctctagttt--aataatctaaat-cataaat-taactactttataagataatccagcatatattgcatattctttcttgaag-----

upper sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g35710.1 (Oryza sativa), 5'ss of exon 9
GGAGACAGCTTTTATAATTCAAGCATTTTGTGCTACAGATCTTGTCAATGAGTATGGTCCAACTATTCAGAGAGCCCATGAGTTTATAAAACATTCGCAGgtttcttatttttatgctcaaataatctaaatatataaaaataaccatttcacatagtaaactaatgttacttg-atatgcttatttggatccaag
||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||  ||||||||| ||||| || ||| |||| ||||||     | |  || ||  |||||| ||||| ||||||  |||| | | || |  || | | ||  | | ||| || | |||  ||| |      
GGAAACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGGTTCAACTGTTAGGAGAGCCCACGAGTTCATGAAAAATTCACAGgttcagagtct--atactttaataatttaaatttataaat-taactagtgcataaggtgatccaacataaattgcatgttctttcttgaag-----