1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATAAGCATTGTGGCAGACAAGGGATTGAAAAAGTCACTTTATACTTCTGCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaag
species | Zea mays |
transcript | GRMZM2G464000_T04 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG --------G-TACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGEST: gi|71429558|gb|DR810608.1|DR810608
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... ttgttacaagTCTCCACAGGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGG
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG TCTCCACAGGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGG
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... ttgttacaagTCTCCACAGGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAAGCATTGTGGCAGACAAGGGATTGAAAAAGTCACTTTATACTTCTGCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA