1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATAAGCATTGTGGCAGACAAGGGATTGAAAAAGTCACTTTATACTTCTGCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaagtctccacag
species | Zea mays |
transcript | GRMZM2G464000_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTAGACTGAAGAAAGGAGAAGTAATAYATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|58029867|gb|CX725294.1|CX725294
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGGTATTGGATCGAGCTEST: gi|211146180|gb|FK958444.1|FK958444
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGG-TATTGGATCGAGCT
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTKGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|211146178|gb|FK958442.1|FK958442
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: TAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|78077940|gb|DV506360.1|DV506360
genomic: TAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAAGCATTGTGGCAGACAAGGGATTGAAAAAGTCACTTTATACTTCTGCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaagtctccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA