Sequence
atgc intronic sequence ATGC exonic sequenceTGGATGGTACGATATCAATATGGGATGTACGTACAGGGAAGAAACCTTCTATTTCTGTCAAAGCTCATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgagtgggaaactttattgattttagtagtactataacctctgctgcataatattttacacgcgttttgacctgcattgtcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g03990.1 (Oryza sativa), 5'ss of exon 9
TGGATGGTACGATATCAATATGGGATGTACGTACAGGGAAGAAACCTTCTATTTCTGTCAAAGCTCATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgagtgggaaactttattgattttagtagtactataacctctgctgcataatattttacacgcgttttgacctgcattgtcag
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CCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGgtatgatatgttca----cttgaaaattcgattatcttcatgaaaaattcttc-taatatttcatgaatatactgactaccgttaccag
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 9
TGGATGGTACGATATCAATATGGGATGTACGTACAGGGAAGAAACCTTCTATTTCTGTCAAAGCTCATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgagtgggaaactttattgattttagtagtactataacctctgctgcataatattttacacgcgttttgacctgcattgtcag
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CCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGgtatgatatgttca----cttgaaaattcgattatcttcataaaaaattcttc-taatatttcatgaatatacggactaccattaccag
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 8
TGGATGGTACGATATCAATATGGGATGTACGTACAGGGAAGAAACCTTCTATTTCTGTCAAAGCTCATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgagtgggaaactttattgattttagtagtactataacctctgctgcata---atattttacacgcgttttgacctgcattgtcag-
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TGGATGGGAGTGTTGCAGTCTGGGATATTCGACTTGGGAAGTCCCCTGCACTATCTTTCAAGGCACATAACGCAGATGTGAATGTCATCTCATGGAACAGgttcttgtcccactatgctgtat--aacttaattctgtttggttttgtgcttcccacgaatgttgtagtcttaatttttcttctttcatgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87156090|gb|DY400879.1|DY400879EST: CATAAAGCAGACGTGAATGTTATCTCATGGAACAG GCTTGCTAGCTGCATGATAGCTTCTGGGTGCGACGATGGCAGTTTCTCAGT
genomic: CATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgag ... gcattgtcagGCTTGCTAGCTGCATGATAGCTTCTGGGTGCGACGATGGCAGTTTCTCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGATGGTACGATATCAATATGGGATGTACGTACAGGGAAGAAACCTTCTATTTCTGTCAAAGCTCATAAAGCAGATGTGAATGTTATCTCATGGAACAGgtgtgtcgagtgggaaactttattgattttagtagtactataacctctgctgcataatattttacacgcgttttgacctgcattgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA