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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTACCAGAGTACTTTGGTGGTTCGTGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttatgactgataccttcttactgtaacatagtttactgtttttatggtacatcaatatgtttaacttatctgttggttgtcattgctgttgctgctggtgatgaccttatttttctactgtag

Basic information

species Zea mays
transcript GRMZM2G452580_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 5'ss of exon 9
CCAATTACCAGAGTACTTTGGTGGTTCGTGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttatgactgataccttcttactgtaacatagtttactgtttttatggtacatcaatatgtttaacttatctgttggttgtcattgctgttgctgctggtgatgaccttatttttctactgtag
|||| |||||||||   |||||||||| ||||| || |||| ||| ||||| |||||| | || ||||||||||||||||| ||||||| ||| ||||| |||||| | | | |    | || ||    || ||||  | |  || |  |  || || ||  | ||| || || |            |   ||| |||  ||| | || |  ||| ||  | | |||||
CCAACTACCAGAGTTTCTTGGTGGTTCTTGCACGTGCTCTAGCCAGGGAGGATGCCTGCGATCCAACAAAGGCCCCTGGAGTGATCCTTTAATTATGAAGgtaaatctctaaatttgccatttttctcttagcata--tcatagtctgcacagtgcagcagga-gttaaatttgt------------aactctgctgccactgttcattaatttaattc-caattgtag

upper sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 9
CCAATTACCAGAGTACTTTGGTGGTTCGTGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttatgactgataccttcttactgtaacatagtttactgtttttatggtacatcaatatgtttaacttatctgttggttgtcattgctgttgctgctggtgatgaccttatttttctactgtag
 ||| | ||||| | ||| || || |  |||| |||| ||||| | ||||||||| |||||||||||||||| |||||||  ||||||  |||  |  | | |  |   |   || |   | ||||    ||   | | |  || |    ||    |  | |||  ||  ||| | |    |                                               
TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgtccctttttgtt-tttgcttataagaatcaattatcttggtaagttgaactaatattattgttgtcttgttttacag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355768|gb|CD440125.1|CD440125
EST:     GGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAA                         CTTGTACATAGCATGGAGTCATTGAAGGAAATTGGGCAAGTATCTGATATA
genomic: GGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttat ... tctactgtagCTTGTACATAGCATGGAGTCATTGAAGGAAATTGGGCAAGTATCTGATATA
EST: gi|32803735|gb|CD955971.1|CD955971
EST:     GGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAA                         CTTGTACATAGCATGGAGCCATTGAAGGAAATTGGGCAAGTATCTGGTATA
genomic: GGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttat ... tctactgtagCTTGTACATAGCATGGAGTCATTGAAGGAAATTGGGCAAGTATCTGATATA