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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCACATGTTCGGTCATTGTATGATAAACTGCAGAATATGCCTCAAGTTGGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAGgtatctttcacatgcttcagcattttctttgtttctggtttatagttatgagcctgtgacacaaaactactgttgcag

Basic information

species Zea mays
transcript GRMZM2G451672_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 5'ss of exon 15
CAGCACATGTTCGGTCATTGTATGATAAACTGCAGAATATGCCTCAAGTTGGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAGgtatctttca-catgctt-----------------cagcattttctttgtttctggtttatagttatgagcctgtgacacaaaa-ctactgttgcag
| | ||||||||  ||| | ||||||||  |||| |||||||||||||||||||| |||||  |||| |||||||| |||||||| || ||| ||||||||||| ||| | || | ||                 |  || | | |||  || |  | | ||||| |||   |||||  |||||  ||||   ||||
CTGTACATGTTCAATCACTATATGATAAGTTGCAAAATATGCCTCAAGTTGGTGTGATACATATGGCACTTCAAAACGATTCAACTGGCTCAATATTGAGgtattttttatcacgatttcttttactgaaataagcgtcagtgtgtttacttttt-tctctagttttgattatgtgatgcaaaaattactaccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211446144|gb|FK957831.1|FK957831
EST:     GGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAG                         TTGGCAGAATGATGTATTTGTGGTTGCTGAACCTGGAGAACTTGCAGACAG
genomic: GGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAGgtatctttca ... actgttgcagTTGGCAGAATGATGTATTTGTGGTTGCTGAACCCGGAGAACTTGCAGACAG
EST: gi|88757996|gb|DY542137.1|DY542137
EST:     GGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAG                         TTGGCAGAATGATGTATTTGTGGTTGCTGAACCCGGAGAACTTGCAGACAG
genomic: GGTGTAATACACCTGGCTCTTCAAAATGATTCAACCGGTTCAGTATTGAGgtatctttca ... actgttgcagTTGGCAGAATGATGTATTTGTGGTTGCTGAACCCGGAGAACTTGCAGACAG