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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATATTTCAGTTGCCTCTGATGTACAAGCACCTGTTTTCTTCTAAATTGCGCAAGCGATCAGGTGTCCTGCTATATGGACCTCCAGGAACAGGGAAGgtaggtttgaaaaggttccatccggattcaattgtatttttgtttagctaccaataacaagtgcatccagaagaaacatgatacgagatcgctaaaataattgtcccttggacttctag

Basic information

species Zea mays
transcript GRMZM2G445617_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G445617_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g52690.3 (Oryza sativa), 5'ss of exon 9
CTTGATATTTCAGTTGCCTCTGATGTACAAGCACCTGTTTTCTTCTAAATTGCGCAAGCGATCAGGTGTCCTGCTATATGGACCTCCAGGAACAGGGAAGgtaggtttgaaaaggttccat----------ccggattcaattgtatttt--tgtttagctaccaataacaagtgcatccagaagaaacatgatacgagatcgctaaaataattgtcccttggacttctag------------
             || |||||| |||| |||||||| ||||||||||||||| | ||||| |||||||||||| | ||||||||||| || ||||||||||| |||||     | ||   |            |  || | ||    |||    ||| | | |     |   || ||   || | || ||  |||  | | | ||  | ||  ||  | ||    || |              
-------------TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttacggtgtttttctattttatactttgtttttagttaagctttaccttttcgtttcttcccatctgtccaaagaggataagcac-atagaaaagcactgta-tacgtgctcattattattatgtttcaatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32848459|gb|CD988140.1|CD988140
EST:     TGCGCAAGCGATCAGGTGTCCTGCTATATGGACCTCCAGGAACAGGGAAG                         ACTTTACTCGCGAAAGCAGTAGCAACAGAATGCTCATTGAACTTTCTTAGC
genomic: TGCGCAAGCGATCAGGTGTCCTGCTATATGGACCTCCAGGAACAGGGAAGgtaggtttga ... ggacttctagACTTTACTCGCGAAAGCAGTAGCAACTGAATGCTCATTGAACTTTCTTAGC