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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAGgtgagtttcttcctaatttttgtattttaagtgttttaagtgagcgggcgaaagggcctctagctgagttggttagatgttctgagtagcactcctcaag...

Basic information

species Zea mays
transcript GRMZM2G439885_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439885_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 5'ss of exon 11
------AAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAGgtgagt-ttcttcctaatt-----tttgtattttaag-tgt-tttaagtgagcgggcgaaagggcctctagctgag----ttggttagatgttctgagtagcactcctcaag
      |||||||||||||| || ||||||||||||||||| || || || ||||||||||   | |||||||| || || |||||| | | | |||| ||||       ||||||   ||  ||| | |   | | |  | ||||   |||   |   |     | | ||  |  |||||  |             
ATTGAGAAACAGGAATTTGGTCTCAAGCCAATGAATTGTCCTGGCCATTGCCTAATGTTTGAGCACAGGGTTCGTTCATACAGAGgtaaatctccttcataatggcatagttgtatcacaaaatgtatctcttttatcaagtgaaaattcctgctgtcaaagtaatcgcttcaaccttctgcctg------------

upper sequence: GRMZM2G439885_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 11
------AAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAGgtgagtttcttcctaatttttgtattttaagtgttttaagtgagcgggcgaaagggcctctagctgagtt-ggttagatgtt---ctgag-tagcactcctcaag
      ||||| || ||||| ||||||||||||||||| ||||| || ||| | |||||||   |||| ||||| || |||||||||||||  | |   | ||||| ||| ||   | | |||| |       |     |  |  | |||   |  || |  || ||    ||||  |  |  | ||   
GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCATTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtg-catttgattttttatatatt---tatcttaaatagcattacatggtgctcctttgctctttgaggctccatcttagattgaggcaatagccttctt-

upper sequence: GRMZM2G439885_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 11
------AAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAGgtgagtttcttcctaatttttgtattttaagtgttttaagtgagcgggcgaaagggcctctagctgagttggttagatgttctgagtagcactcctcaag----
      ||||| || ||||| ||||||||||||||||| ||||| |||||| | |||||||   |||| ||||| || |||||||||||||  | |     |  || ||| ||   | | |||| |       |     |   | | |||      |           || |    |     ||     
GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtg-catttggttccttatatatt---tatcttaaatagcataacatggtgcttttttgctcttcaaggctccatcctagattgaggcaaactaaaattt