Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaagagatgctcctgcgaacgacag

Basic information

species Zea mays
transcript GRMZM2G437859_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 9
TCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacag
||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||||||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||
TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240436|gb|DT648350.1|DT648350
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|5055765|gb|AI734652.1|AI734652
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCAT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCAT
EST: gi|71431025|gb|DR812075.1|DR812075
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACAGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT