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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGCACTGGAGTCTGATAACAATACGATAACTCGATCCGCACATTTGATGGTTGGAACATTAGCCGGAAGTCTGGCACATGTTACTTGCAAGgtatttctgcttgaggcctttgtactgttgatgcagtgctatacctgcttgttgattctattaacccctaacattttgtatctgttgaatacaactaataattgtatttctctttttctctgttgtag

Basic information

species Zea mays
transcript GRMZM2G435765_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179406_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 26
GATTATGCACTGGAGTCTGATAACAATACGATAACTCGATCCGCACATTTGATGGTTGGAACATTAGCCGGAAGTCTGGCACATGTTACTTGCAAGgtatttctgcttgaggcctttgtactgttgatgcagtgctatacctgcttgttgattctattaacccctaacattttgtatctgttgaatacaactaataattgtatttctctttttctctgttgtag
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GATTATGCACTGGAGTCAGATAACAATACCATAAAATCTTCTGTACATTCAATAGCCAGGACAATAGCTGGAAATCTAGCCTATGCTAATTGCAAGgtg---ctgcttaatgcctctaaaac-ttgttcct---ctgtgcactattgctgtttcttctgtagtttgatactttgattttgttacttcctccgtttcaggttat---------------------