Sequence
atgc intronic sequence ATGC exonic sequenceCTACAGGTTTAGACAGTGCTTCCTCTCAGCTACTTCTAAGGGCACTTCGACATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgtaaacatgtaattagtaatcgccaatttgtctcctttcagtatgaattgatgtgctccctatcttcaactaaatttgattctgcttgcatgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os10g30610.2 (Oryza sativa), 5'ss of exon 8
CTACAGGTTTAGACAGTGCTTCCTCTCAGCTACTTCTAAGGGCACTTCGACATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgtaaacatgtaattagt--aatcgccaatttgtctcctttcagtatgaattgatgtgctccctatcttcaactaaatttgattctgctt-gcatgc--
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CTACAGGCTTGGACAGTGCTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTTGTGCAGTGATTCACCAACCAAGgtttcctactttccttacatacattgaatcattaatttgtctcctttcagaa-gaatcagta----ctcaattcttacctaaataatattcaaatgagaatatgg
upper sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT2G37010.1 (Arabidopsis thaliana), 5'ss of exon 9
CTACAGGTTTAGACAGTGCTTCCTCTCAGCTACTTCTAAGGGCACTTCGACATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgtaaacatgtaattagtaatcgccaatttgtctcctttcagtatgaattgatgtgctccctatcttcaactaaatttgattctgcttgcatgc
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CTACAGGTTTAGATAGTGCATCTTCACAATTACTTCTTAGAGCACTTCGACGTGAAGCACTTGAAGGTGTTAACATTTGTATGGTCGTCCATCAACCCAGgtatgtt------atctcctccatga-----attatgttacaattttatgttaa--gaaatactttttgcttaataattggtttt-ttcctcttattag-
upper sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv06s0004g02490.t01 (Vitis vinifera), 5'ss of exon 9
CTACAGGTTTAGACAGTGCTTCCTCTCAGCTACTTCTAAGGGCACTTCGACATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgtaaacatgtaattagtaatcgccaatttgtctcctttcagtatgaattgatgtgctccctatcttcaactaaatttgattctgcttgcatgc--
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CTTCTGGTTTGGACAGTTCATCTTCTCAGTTACTACTTAGAGCACTTCGTCGGGAAGCTCTTGAAGGAGTAAATGTTTGCATGGTGGTTCACCAACCAAGgttagttaaaggtttgaaaattacaaaagt--acacatttttaagaagtgtagtttctttcatcctccttcgtttatttttctaggtatagctttttcgtccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33095094|gb|CF055088.1|CF055088EST: CATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAG CTATACTTTGTTCAACATGTTTGATGACTTTGTCCTTTTGGCAAGAGGTGG
genomic: CATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgta ... ttttacacagCTATACTTTGTTCAACATGTTTGATGACTTTGTCCTTTTGGCAAGAGGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACAGGTTTAGACAGTGCTTCCTCTCAGCTACTTCTAAGGGCACTTCGACATGAAGCACTTGAAGGTGTAAATGTTTGTGCAGTGGTTCACCAACCGAGgtatgttgtaaacatgtaattagtaatcgccaatttgtctcctttcagtatgaattgatgtgctccctatcttcaactaaatttgattctgcttgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG