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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGTGCAACCAACCAGGGTGATTCCACACCCGATTGCATTCATTGCAGAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacattttaagatgctatgtcaatcaatgtcgagcagcagcggagggagtagggtagggatcttac

Basic information

species Zea mays
transcript GRMZM2G428386_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149073035|gb|EE161302.2|EE161302
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|149099463|gb|EE185503.2|EE185503
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|13150102|gb|BG320424.1|BG320424
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|94475269|gb|EB704227.1|EB704227
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|211388388|gb|FL435741.1|FL435741
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|60351334|gb|DN218307.1|DN218307
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|78125674|gb|DV544058.1|DV544058
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: gi|76016592|gb|DT943762.1|DT943762
EST:     GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC                         TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAAGTGCAACCAACCAGGGTGATTCCACACCCGATTGCATTCATTGCAGAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacattttaagatgctatgtcaatcaatgtcgagcagcagcggagggagtagggtagggatcttac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA