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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGACACAGATCAGTTCATGACAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAATgtgagtggcatgaaccagctctctccctttttactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaacatttctctatggcttcaatcag

Basic information

species Zea mays
transcript GRMZM2G427620_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G427620_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 16
GTTGGGACACAGATCAGTTCATGACAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAATgtgagtggcatgaaccagctctctccctttt-tactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaacatttctctatggcttcaatcag
|||||||||| ||||||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| | || ||  |  | |  || |  | || |||  |    |||  | || |  | |        | ||||  ||| ||    |||||  | |    |                                                                                          
GTTGGGACACCGATCAGTTCCTTACAGATATTTCAGAGGCTACTTTGGTTATGTCAAGTGTGGTTAAGAATgtgagttgaattaataatatgttgccttgatatattcaggta---attatcaatatgatact-------attcat--gagttgtaatgttttgatatggttgtag---------------------------------------------------------------------------------------

upper sequence: GRMZM2G427620_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 17
GTTGGGACACAGATCAGTTCATGACAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAATgtgagtggcatgaaccagctctctccctttttactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaacatttctctatggcttcaatcag
                                                              | |  |  ||    |||   ||  || || |    |    |  |    ||| |  || |  |||  ||     |||      | | |  || |    | |  || ||| |  |     |  || |||    ||| | | ||    ||                                                     
--------------------------------------------------------------GGTGGGCTTGCACCTGGTG-GATTCAACTTTGATGCCAAATTgttggttcc-cgctgacattgttttttttttttgtgtgtgtgtaaattggt---ctctgattcaactgaatttcaattgacttggaa--ttctattatgtcaacag----------------------------------------------------

upper sequence: GRMZM2G427620_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 17
GTTGGGACACAGATCAGTTCATGACAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAATgtgagtggcatgaaccagctctctccctttttactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaacatttctctatggcttcaatcag
                                   ||||  ||||       ||  | |  | ||      |  | || ||    ||  |||| ||  | | ||||   || |   ||   | | | |  |||   |    |  | |     ||   ||| | |                                                                                                  
----------------------------------GGAGG--ACTTGCACCCGGTGGATTCAACTTCGATGCGAAATTgtca--gtccttctctatctttatatacttgtattcctgtttgttttattcccccc--ctcagtttctgtacttagcaatgttatag--------------------------------------------------------------------------------------------------