1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATGTGGATCTTGAACCTGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctccttaactgatgtacatgtagttaaggcttttatgtgattcctgaatcttaacacttgcacttgttcag
species | Zea mays |
transcript | GRMZM2G426275_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCEST: gi|71439957|gb|DR821007.1|DR821007
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCEST: gi|148986617|gb|EE030388.2|EE030388
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCEST: gi|74244431|gb|DT652345.1|DT652345
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCEST: gi|149082839|gb|EE172063.2|EE172063
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCEST: gi|211529739|gb|FL258565.1|FL258565
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: GTGCAAACTGAAAGGGCCAG-AGAATTGACAGCATATTACAAGATTGCTA AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: GTGCAAACTGAAAGG-CCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGGATCTTGAACCTGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctccttaactgatgtacatgtagttaaggcttttatgtgattcctgaatcttaacacttgcacttgttcag
- - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - GGAGAA