1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTGACATGTCAAAGGCATTGGTTGCCATCACGCCTGATGCTGCTTCCATTCCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacattggtcttgacaaaatttaatgtcattgataataacttaagttccttcatttcttgtactatctgtatcactgatgaggtccacacctgtctttttaatctgtttactttcatctgcttgcag
species | Zea mays |
transcript | GRMZM2G422464_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|31356899|gb|CD441256.1|CD441256
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|67020656|gb|CO449405.1|CO449405
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|31354340|gb|CD438697.1|CD438697
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|548043|gb|T25243.1|T25243
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|32866775|gb|CF006457.1|CF006457
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|31351444|gb|CD435801.1|CD435801
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|67025134|gb|CO453883.1|CO453883
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|31356040|gb|CD440397.1|CD440397
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGAEST: gi|67018601|gb|CO447350.1|CO447350
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
EST: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGT TTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
genomic: CCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacatt ... ctgcttgcagTTATGAACTGCCAGATTCACACCCTCTTCTGGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGACATGTCAAAGGCATTGGTTGCCATCACGCCTGATGCTGCTTCCATTCCAACTCCAAAGCTCAAGAATGTCAATCGTCTGAGGACAGAACACCAAGTgtatgacattggtcttgacaaaatttaatgtcattgataataacttaagttccttcatttcttgtactatctgtatcactgatgaggtccacacctgtctttttaatctgtttactttcatctgcttgcag
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