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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGAGAGTGGTTTTCAGAGCATAGTTATATCTCTGAAGGACAGTTTCTATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcgggtatgcattactgcacctgtcttatttcctgtgcgcatgcttaacacagtgattggatgtgcag

Basic information

species Zea mays
transcript GRMZM2G416069_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416069_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G18470.1 (Glycine max), 5'ss of exon 18
ATGGCGAGAGTGGTTTTCAGAGCATAGTTATATCTCTGAAGGACAGTTTCTATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcg---ggtatgcattactgcacctgtct--tatttcctgtgcgcatgcttaacacagtgattggatgtgcag-----------
|||| |  | |||||||||||| ||||| ||||| ||||| ||||  || |||||||| ||||| ||| | ||||| ||||| || ||||| ||| || ||||  |     | ||| ||||| |  |  |   |  ||| |     || |  ||| |    | |||   | | | |             
ATGGTGGAAATGGTTTTCAGAGTATAGTGATATCACTGAAAGACACCTTTTATGACAAAGCCGAAGCATTAGTTGGGGTTTACAGAGACTCTGAAAGAGGgtaaatttcttgatat-cattaattgatttaaatagtatgtttatggcactagctcagtgtattgacctggtttacttggaatttgcag

upper sequence: GRMZM2G416069_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT3G54670.3 (Arabidopsis thaliana), 5'ss of exon 17
ATGGCGAGAGTGGTTTTCAGAGCATAGTTATATCTCTGAAGGACAGTTTCTATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcgggtatgcat-------tactgcacctgtct-tatttcctgtgcgcatgcttaacacagtgattggatgtgcag------------
| |  | || ||| || || ||||| || |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||| || ||| | ||  | ||||| |  |  ||| ||        |  || || ||  | |||||  |  ||  |   |      | |  |||||  || |             
AGGATGGGAATGGCTTCCAAAGCATTGTAATATCTCTCAAGGACAGCTTCTATGACAAGGCGGAGGCTCTGGTTGGAGTTTACAGAGACACCGAGAGGAGgtaagcagaatatccacataaatcttttgtacatgcgtctattttattggcataatatctgagaactcgttggagatgtatttttggctgcag

upper sequence: GRMZM2G416069_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv07s0005g03440.t01 (Vitis vinifera), 5'ss of exon 12
ATGGCGAGAGTGGTTTTCAGAGCATAGTTATATCTCTGAAGGACAGTTTCTATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcgggtatgcattactgcacctgtcttat---ttcctgtgcgcatgcttaacacagtgattggatgtgcag------------------------------------------------------------
| || |  |||||||||||||| || || ||||| |||||||| || || ||||||||||| || || || ||||| ||||| |||||||| ||  |  |||| ||    |      || |  |  |   | ||   ||    |     ||||  ||    ||  | | | | |||                                                            
AGGGAGGCAGTGGTTTTCAGAGTATCGTGATATCACTGAAGGATAGCTTTTATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGGgtaagtttc-ttcatgatattatatttagttaatgcgttttcattttggtgct--actttctgggttgttttccagtatgtccaccaaattaacctgctaagcagagacaatgctaatacctatatttaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18659884|gb|BM500573.1|BM500573
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGGAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATANGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|60353637|gb|DN220610.1|DN220610
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|60399460|gb|DN232272.1|DN232272
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|5713812|gb|AI943797.1|AI943797
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGGAG                         TTGCTCGAGGACTCTCACCTTCGACATGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32856812|gb|CD996493.1|CD996493
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|67019300|gb|CO448049.1|CO448049
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGGAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|211099838|gb|FL388151.1|FL388151
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|33092424|gb|CF052418.1|CF052418
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|9953703|gb|BE640286.1|BE640286
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|60396930|gb|DN229749.1|DN229749
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32857536|gb|CD997217.1|CD997217
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCG-GGTACNT-TCACCTTCGACCTGAGAAAGTATAGGGAATCGTGA
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGG-AC-TCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGA
EST: gi|32931521|gb|CF036333.1|CF036333
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32856527|gb|CD996208.1|CD996208
EST:     TATGACAAGGCCGAGACACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|60340169|gb|DN207142.1|DN207142
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32932198|gb|CF037010.1|CF037010
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCAGCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32839032|gb|CD978713.1|CD978713
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGGACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|60397605|gb|DN230421.1|DN230421
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|67026121|gb|CO454870.1|CO454870
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGGAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|211416225|gb|FL415027.1|FL415027
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|211089791|gb|FL379369.1|FL379369
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGA
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGA
EST: gi|211099837|gb|FL388150.1|FL388150
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|74034784|gb|DT535275.1|DT535275
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCCTTCGACCCTGAGAAAGTATAGGGGAATCGTG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACC-TTCGACC-TGAGAAAGTATAGGG-AATCGTG
EST: gi|5895740|gb|AW036986.1|AW036986
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGGAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32838704|gb|CD978385.1|CD978385
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|6742487|gb|AW313302.1|AW313302
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|32932580|gb|CF037392.1|CF037392
EST:     AAGGCCGAGGCGCTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: AAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|211438053|gb|FL453415.1|FL453415
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|211072011|gb|FL419961.1|FL419961
EST:     TATGACAAGGCCGAGGCACTTGTTGGKGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTYTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAAAGTATAGGGAATCGTGAAG
EST: gi|166438907|gb|EG193297.1|EG193297
EST:     TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAG                         TTGCTCGAGGACTCTCACCTTCGACCTAAGAA
genomic: TATGACAAGGCCGAGGCACTTGTTGGTGTTTATAGGGACTCAGAACGAAGgtaggtcggg ... ggatgtgcagTTGCTCGAGGACTCTCACCTTCGACCTGAGAA