Sequence
atgc intronic sequence ATGC exonic sequenceCATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAGATGATGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G412899_T05 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 9
CATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAGATGATGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctgttctata---tcctttttgttgtgtttatggacttc-taataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacag
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CATGTTAAGTCTGCTATGGCAGAACTCTCCCGATCTGAAAGAGGCGATGATGGAGAAAATGTGAAGTATTCGGAATTGTTTTATGGTCGCAACTTTAATGgtacaagctgttatgtgttttccattctgttgtgtatttgcgctaaactataaccttatttatgtttggccttgaagtttgttcattacaagtcccttttt-gctacag
upper sequence: GRMZM2G412899_T05 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 9
CATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAGATGATGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctgttctata---tcctttttgttgtgtttatggacttc-taataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacag
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CATGTTAAGTCTGCTATGGCAGAACTCTCCCGATCTGAAAGAGGCGATGATGGAGAAAATGTGAAGTATTCGGAATTGTTTTATGGTCGCAACTTTAATGgtacaagctgttatgtgttttccattctgttgtgtatttgcgctaaactataaccttatttatgtttggccttgaagtttgttcattacaagtcccttttt-gctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71766867|gb|DR964804.1|DR964804EST: TGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATG TTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAA
genomic: TGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctg ... tttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAGATGATGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA