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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTTCGCTCGCATACTCTCTCCATCCTTGTGAATGACTGTCCTGGTGTCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttttcgacaaagttccctttcttgttgaatatagtgccaggctagttattgacaagtgcatacttgtcag

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407044_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g39570.5 (Oryza sativa), 5'ss of exon 8
TGGACTTCGCTCGCATACTCTCTCCATCCTTGTGAATGACTGTCCTGGTGTCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttttcgacaaagttccctttcttgttgaatatagtgccaggctagttattgacaagtgcatact---tgtcag
||||||||| || |||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||    ||   |   |  || |  |    |  |||| |  ||||| || |||||  ||||||    |||||
TGGACTTCGATCACATACTCTATCCATCCTTGTCAATGATTGCCCTGGTGTTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAGgttttctttttttcgaatagttattacctcgccg----tcatgcctgattagttgttaacaagaccatactactggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89253086|gb|DY624872.1|DY624872
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|60338155|gb|DN205128.1|DN205128
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|211132732|gb|FL016680.1|FL016680
EST:     GAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: GAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|149087823|gb|EE287139.2|EE287139
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|78122763|gb|DV541147.1|DV541147
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|60343820|gb|DN210793.1|DN210793
EST:     ACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: ACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|60340849|gb|DN207822.1|DN207822
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|211449937|gb|FL278245.1|FL278245
EST:     TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: TCCTCAACATTGTAACAGGAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|211452064|gb|FL278249.1|FL278249
EST:     GAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
genomic: GAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGCCCAGCTGAGAAGGAAGGCATTTCGCGGATTACAACA
EST: gi|211132731|gb|FL016679.1|FL016679
EST:     GAGTCTTTGCTCGCAGGGGCTACAATATACAG                         AGCCTTGCTGTTGGCTGCAGCTGAGAAGGAAGGCATTTCGCGGATTACAAC
genomic: GAGTCTTTGCTCGCAGGGGCTACAATATACAGgttttctttt ... tacttgtcagAGCCTTGCTGTTGGC-CCAGCTGAGAAGGAAGGCATTTCGCGGATTACAAC