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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTAACATGAAAGAAGCTTGGGAAGTACTACGCACTGGCAGCAAAGCTAGAGTCGTGGGTTCCACAAATGCTAATGAGCATAGTAGTCGATCTCACTGgttggtacctttgtccaaagatgttttattcacttatattatgacataaatcacagattatgtactaattgatatttaatttcag

Basic information

species Zea mays
transcript GRMZM2G400223_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G400223_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g42160.1 (Oryza sativa), 5'ss of exon 10
TGACTAACATGAAAGAAGCTTGGGAAGTACTACGCACTGGCAGCAAAGCTAGAGTCGTGGGTTCCACAAATGCTAATGAGCATAGTAGTCGATCTCACTGgttggtacctttg-tccaaagatgttttattcacttatattatgacataaatcacagattatgtactaattgatatttaatttcag--------------
| ||||| ||||| || || ||||| || || |  ||||| ||||||||||| || || ||||| || ||||||||||||||||| || ||||| |||||||  || ||||   | || |  | | ||   ||| | | | ||  |||  ||   | | | |||| | ||| |    |||  ||                
TTACTAATATGAATGAGGCCTGGGAGGTCCTGCAAACTGGAAGCAAAGCTAGGGTTGTCGGTTCAACGAATGCTAATGAGCATAGCAGCCGATCACACTGgtcagtcccttaaattcatacttttctttgacacatttttcatc-catttatgctaaagt-tgtaattattaaatcctaacctcgttaattctgtatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5566690|gb|AI881706.1|AI881706
EST:     AGTCGATCTCACTG                         TATACATTGTGTAATGGTCAAAGGAGAAAACTTGATGAATGGAGAATGTAC
genomic: AGTCGATCTCACTGgttggtacct ... ttaatttcagTATACATTGTGTAATGGTCAAAGGAGAAAACTTGATGAATGGAGAATGTAC