Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGGGAACTTCTGAATGATATGAAGGCTGTATGGCTTCGCAGCCCGAAGGAGGTTACTGATGAGGAATACTCGAAGTTTTACCACTCACTAGCCAAGgtaatactgtagtgatgaattagtagtaccgaatgatttttttattttttttggtcaaagaaagcttttgtttgttggtcttgttgatgaaacatttgtataacttcataataattatttttcag

Basic information

species Zea mays
transcript GRMZM2G399073_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 9
TGAATGGGAACTTCTGAATGATATGAAGGCTGTATGGCTTCGCAGCCCGAAGGAGGTTACTGATGAGGAATACTCGAAGTTTTACCACTCACTAGCCAAGgta---atactgtagtgatgaattagtagtaccgaatgatttttttattttttttggtcaaagaaagcttttgtttgttggtcttgttgatgaaacatttgtataacttcataataattatttttcag
||| ||||| |||||||||||| |||||||| |||||||||| ||||| |||||||||||||| || |||||| | ||||||||||||||||| || ||||||   | |||| |||||||||||   || | |  || |  ||||   |     | |   ||||||||   |      |  | |  |  || |||   || | ||                       
TGAGTGGGAGCTTCTGAATGATGTGAAGGCTATATGGCTTCGTAGCCCTAAGGAGGTTACTGAAGAAGAATACACAAAGTTTTACCACTCACTTGCTAAGgtacacagactgcagtgatgaatttacaggagc--ataacattttatgtaagccttgcagaagaaagcaagtaacc--tcatttaat--atcaaattattttgtag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211478283|gb|FL245116.1|FL245116
EST:     GAAGTTTTACCACTCACTAGCCAAG                         GACTTCAGTGATGACAAGCCTATGGGGTGGAGCCACTTCACTGCTGAAGGA
genomic: GAAGTTTTACCACTCACTAGCCAAGgtaatactgt ... tatttttcagGACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
EST: gi|22489665|gb|BU049575.1|BU049575
EST:     AGGAGGTTACTGACGAAGAATACTCAAAGTTTTACCACTCACTAGCCAAG                         GACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
genomic: AGGAGGTTACTGATGAGGAATACTCGAAGTTTTACCACTCACTAGCCAAGgtaatactgt ... tatttttcagGACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
EST: gi|19822479|gb|BQ048503.1|BQ048503
EST:     GGAGGTTACTGCCGAAGAATACTCAAAGTTTT-CCACTTCACTAGCCAAG                         GACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
genomic: GGAGGTTACTGATGAGGAATACTCGAAGTTTTACCAC-TCACTAGCCAAGgtaatactgt ... tatttttcagGACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
EST: gi|211478285|gb|FL245118.1|FL245118
EST:     GAAGTTTTACCACTCACTAGCCAAG                         GACTTCAGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA
genomic: GAAGTTTTACCACTCACTAGCCAAGgtaatactgt ... tatttttcagGACTTCGGTGATGACAAGCCTATGGGTTGGAGCCACTTCACTGCTGAAGGA